PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000108.1_g00016.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family GRF
Protein Properties Length: 318aa    MW: 35399.3 Da    PI: 8.2671
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000108.1_g00016.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC78.66.1e-2581125145
                      WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                              d+epgrCrRtDGKkWRCs+++++++k+CErH+hrgr+rsrk++e+
  Itr_sc000108.1_g00016.1  81 DPEPGRCRRTDGKKWRCSKDAYPDSKYCERHMHRGRNRSRKPVES 125
                              79****************************************986 PP
2QLQ66.37e-232055237
                      QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
                             +FTa Q+q+L++Q+++yKyL+a++PvPp+L+++i++
  Itr_sc000108.1_g00016.1 20 PFTAVQWQELEHQAMIYKYLVAGVPVPPDLVVPIRR 55
                             9*********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009513.2E-131955IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166624.2822055IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088805.4E-172054IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.76281125IPR014977WRC domain
PfamPF088793.6E-2182124IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MSGPSTSVAG EGYGYGFRPP FTAVQWQELE HQAMIYKYLV AGVPVPPDLV VPIRRSFEAL  60
SARFFQHQSL NYCSYYGKKF DPEPGRCRRT DGKKWRCSKD AYPDSKYCER HMHRGRNRSR  120
KPVESQSTSQ SLSTAMSHVN TGSSYGNSAT KLGMEPASYG TENKEFRYPL GMTLNAGERD  180
FSQETSAGVR SLGIGSSTDS TWCLLPTQVP SNPMFKTKNE PQFLGGVSEL TIDSTMPKQR  240
QQHCFFGSEI DSPGALKQEQ HSIRPFLSEW PTTTKESWSN LENDGSNQNA FSTTQLSISI  300
PVPPSSFSSR SDCSQNDA
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3031701e-57AY303170.1 Solanum bulbocastanum chromosome 8 clone UW3A14, complete sequence.
GenBankAY3031711e-57AY303171.1 Solanum bulbocastanum chromosome 8 clone UW177O13, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019156053.10.0PREDICTED: growth-regulating factor 4-like
SwissprotQ6AWY62e-83GRF3_ORYSJ; Growth-regulating factor 3
TrEMBLA0A3Q7HTE31e-157A0A3Q7HTE3_SOLLC; Uncharacterized protein
STRINGSolyc08g075950.1.11e-158(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7432384
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.13e-51growth-regulating factor 5