PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000107.1_g00040.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

GRAS

Protein Properties

Length: 619aa MW: 69718.6 Da PI: 6.2831

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000107.1_g00040.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	362.1	7.9e-111	245	615	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsev 87 + lL++cA+a+++ d +++++lLa++++++sp+g+ m+Rla+y+++AL+arl++ ++ ++ ++ +++ + ++ l+a++++ ++ Itr_sc000107.1_g00040.1 245 RGLLTQCAQAIANYDGRAVNELLAKIRHHSSPRGNGMERLAFYLANALEARLNGAGTAIFT---VQFSNNISAANILKAYHMYIKA 327 679*************************************************7776663...333333459999****** PP GRAS 88 sPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAee 171 sP+ k+s++ aN+ I+e ++g++++H+iDf++ +G+QWp+++q+La+Rp+gpp+lRiTg++ p++g +e++e+tg rL+kf+e+ Itr_sc000107.1_g00040.1 328 SPFKKISNIYANHYIMEMAAGKHALHVIDFGVLYGFQWPCMIQSLANRPGGPPKLRITGIDLPQPGfkPAERVEATGARLKKFCEQ 413 *************************************************************999************** PP GRAS 172 lgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerf 257 ++vpfef++ +akr+e+++le+L+++++E laVn+ ++l++++de+v +s+rd+vL l+ +++P+++++ + +ns+ F +rf Itr_sc000107.1_g00040.1 414 FNVPFEFKA-IAKRWETITLEDLEIDRDEILAVNCLYRLENVPDETVVPDSPRDAVLGLIHKIRPDIFIHGVGNGAYNSPFFTTRF 498 *****.7*********************************************************************** PP GRAS 258 lealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrk 343 ea+ ++s+lfd++ea++++e+e+r+ E+ +lgr++ nv+aceg++r+er et+++W+ r ++aGF++vpl+++ ++ +k r Itr_sc000107.1_g00040.1 499 REAVFHFSTLFDMFEATVAPEDEDRRLFEETVLGRNALNVIACEGTARVERPETYKQWKGRNKRAGFRQVPLDQELVMLVKDKARS 584 *********************************************************************************9 PP GRAS 344 vksdgyrveeesgslvlgWkdrpLvsvSaWr 374 + + ++v+ + ++l++gWk+r ++++S+W+ Itr_sc000107.1_g00040.1 585 DYHKDFSVDGDGKWLLQGWKGRVVYALSCWK 615 99888***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	63.121	218	595	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.7E-108	245	615	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 619 aa Download sequence Send to blast
MEALVQEFYA NTNGFMLNRH SKPANPKLNG KKRRDLDSFQ DFPAAGGGEE EDEDYSDAVL 60 KYINQMLMEE EDLENRPCML HDCIALQATE KYFSDVLHGS DHADLSSSNA SPDPTDYGAS 120 SDCLFSTPDS QSGSVSPGSD GDFPAPNLLL PHSNAVNLEL EDRSPPKGKR NYYSNKEDES 180 AEKQRNKQLA TSTHETEPPL EKFNEVLLCN IQEPRKKSDD EFKGGAAAPR RRKKRESHKE 240 VVDLRGLLTQ CAQAIANYDG RAVNELLAKI RHHSSPRGNG MERLAFYLAN ALEARLNGAG 300 TAIFTVQFSN NISAANILKA YHMYIKASPF KKISNIYANH YIMEMAAGKH ALHVIDFGVL 360 YGFQWPCMIQ SLANRPGGPP KLRITGIDLP QPGFKPAERV EATGARLKKF CEQFNVPFEF 420 KAIAKRWETI TLEDLEIDRD EILAVNCLYR LENVPDETVV PDSPRDAVLG LIHKIRPDIF 480 IHGVGNGAYN SPFFTTRFRE AVFHFSTLFD MFEATVAPED EDRRLFEETV LGRNALNVIA 540 CEGTARVERP ETYKQWKGRN KRAGFRQVPL DQELVMLVKD KARSDYHKDF SVDGDGKWLL 600 QGWKGRVVYA LSCWKPAME

Sequence ? help Back to Top

Protein Sequence Length: 619 aa Download sequence Send to blast

MEALVQEFYA NTNGFMLNRH SKPANPKLNG KKRRDLDSFQ DFPAAGGGEE EDEDYSDAVL  60
KYINQMLMEE EDLENRPCML HDCIALQATE KYFSDVLHGS DHADLSSSNA SPDPTDYGAS  120
SDCLFSTPDS QSGSVSPGSD GDFPAPNLLL PHSNAVNLEL EDRSPPKGKR NYYSNKEDES  180
AEKQRNKQLA TSTHETEPPL EKFNEVLLCN IQEPRKKSDD EFKGGAAAPR RRKKRESHKE  240
VVDLRGLLTQ CAQAIANYDG RAVNELLAKI RHHSSPRGNG MERLAFYLAN ALEARLNGAG  300
TAIFTVQFSN NISAANILKA YHMYIKASPF KKISNIYANH YIMEMAAGKH ALHVIDFGVL  360
YGFQWPCMIQ SLANRPGGPP KLRITGIDLP QPGFKPAERV EATGARLKKF CEQFNVPFEF  420
KAIAKRWETI TLEDLEIDRD EILAVNCLYR LENVPDETVV PDSPRDAVLG LIHKIRPDIF  480
IHGVGNGAYN SPFFTTRFRE AVFHFSTLFD MFEATVAPED EDRRLFEETV LGRNALNVIA  540
CEGTARVERP ETYKQWKGRN KRAGFRQVPL DQELVMLVKD KARSDYHKDF SVDGDGKWLL  600
QGWKGRVVYA LSCWKPAME

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	4e-44	228	616	1	380	Protein SCARECROW
5b3h_A	3e-44	250	616	24	379	Protein SCARECROW
5b3h_D	3e-44	250	616	24	379	Protein SCARECROW
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	214	234	RKKSDDEFKGGAAAPRRRKKR
2	228	232	PRRRK
3	229	234	RRRKKR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019178593.1	0.0	PREDICTED: scarecrow-like protein 11
TrEMBL	A0A2G3AXQ4	0.0	A0A2G3AXQ4_CAPCH; Uncharacterized protein
STRING	Solyc01g100200.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA276	24	191

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G59450.1	1e-167	GRAS family protein