PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000107.1_g00039.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family GRAS
Protein Properties Length: 767aa    MW: 85459.9 Da    PI: 5.6689
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000107.1_g00039.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS360.91.8e-1103617321373
                     GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfse 86 
                              l++lL +cA+ +++ d + a+  L+++++++sp+gdp+qRla++f+++L+arla+++++ly+al+p++ +    se+l+a++++  
  Itr_sc000107.1_g00039.1 361 LRSLLSSCAQSIAAADYRTANDQLKKIRQHSSPSGDPNQRLASVFANGLEARLAGTGTQLYAALAPKTIT---ASEKLKAYHTYLS 443
                              6899****************************************************************99...9************ PP

                     GRAS  87 vsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAe 170
                               +P+ +++ + aN++I++ +++ +++H+iDf+i +G+QWp L+q L++Rp+gpp+lR+Tg++ p++g   +e++e+tg+rLa+++e
  Itr_sc000107.1_g00039.1 444 FCPFKRIAIFFANKMIYDVASKGSTLHVIDFGIFYGFQWPILIQHLSQRPGGPPKLRVTGIELPHPGfrPAEKVEQTGRRLANYCE 529
                              *****************************************************************9999***************** PP

                     GRAS 171 elgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFler 256
                              ++gv+fe+n+++++++e++++++L++ +g+++aVn+ ++ ++llde++  +s+rd+vL+l+++++P++ v +    +++s+ F++r
  Itr_sc000107.1_g00039.1 530 RFGVQFEYNAIASQNWETIKIDDLKLASGDVVAVNCLFRFKNLLDETAVADSPRDAVLSLIRKINPNIYVQAVISGSYSSPFFVTR 615
                              ***********999************************************************************************ PP

                     GRAS 257 flealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllr 342
                              f eal +ysa+fd+++a+l+r++++r   E+e++grei+nvvaceg er er et+++W+ r ++aGFkp+p++ + +k+ +  ++
  Itr_sc000107.1_g00039.1 616 FREALFFYSAVFDMFDATLSRDDHQRLDFEQEFIGREIMNVVACEGMERLERPETYKQWQVRNMRAGFKPLPVKPELVKKLRGKVK 701
                              ************************************************************************************** PP

                     GRAS 343 kvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                                + + +  +e+ +++++gWk+r +   S+W
  Itr_sc000107.1_g00039.1 702 AGYHKDFVFDEDGHWILQGWKGRIMCGSSCW 732
                              999888************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098565.946335713IPR005202Transcription factor GRAS
PfamPF035146.3E-108361732IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 767 aa     Download sequence    Send to blast
MAMDHQFSRL TDSVNRFLLE DENIFSSLKR SPDIPGSYNV DSLPLDNVDA PLVIHDPNLG  60
SYAPTLDYPD DHDSDTVLKY LNQILLEENI DENPSMFYDP IALKAAENSF YEALKEKPPS  120
PHQAPLFVNS NARSPDSILP SSGGYSTSSS SIGSCNADPQ WIVDPGESKS SVTSYSPEFS  180
FQSSSQANSY RLNGSLNSFS SAMNAQTDSF VNANLVPNIF SDTESILQFK RGMEEASRFL  240
PTGNQLVIDL DKYSLPPKTD ELSGDAVIKI EKDEKDRSAN SSRGKKHHHP DDSGLEEEER  300
SSKHSAVYEE EVELSEVFDR VLLCTDNYGC NVNVEGKQQN GASGGKGRTK KQGGNRETVD  360
LRSLLSSCAQ SIAAADYRTA NDQLKKIRQH SSPSGDPNQR LASVFANGLE ARLAGTGTQL  420
YAALAPKTIT ASEKLKAYHT YLSFCPFKRI AIFFANKMIY DVASKGSTLH VIDFGIFYGF  480
QWPILIQHLS QRPGGPPKLR VTGIELPHPG FRPAEKVEQT GRRLANYCER FGVQFEYNAI  540
ASQNWETIKI DDLKLASGDV VAVNCLFRFK NLLDETAVAD SPRDAVLSLI RKINPNIYVQ  600
AVISGSYSSP FFVTRFREAL FFYSAVFDMF DATLSRDDHQ RLDFEQEFIG REIMNVVACE  660
GMERLERPET YKQWQVRNMR AGFKPLPVKP ELVKKLRGKV KAGYHKDFVF DEDGHWILQG  720
WKGRIMCGSS CWLTETCQCN AFACLNLTTF PSSAYCSGIG NASVALW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-443616885328GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019178592.10.0PREDICTED: scarecrow-like protein 14
SwissprotQ9XE580.0SCL14_ARATH; Scarecrow-like protein 14
TrEMBLA0A1S4BAP20.0A0A1S4BAP2_TOBAC; scarecrow-like protein 14
STRINGXP_009606498.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA27624191
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0SCARECROW-like 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]