PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000106.1_g00014.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MIKC_MADS
Protein Properties Length: 201aa    MW: 22746 Da    PI: 7.9889
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000106.1_g00014.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF801.6e-25959151
                             S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                   SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                             k+i+n + rqvtfskRr g++KKA+ELS+LCd+++ +i+fs tgkl+ ys+
  Itr_sc000106.1_g00014.1  9 KKIDNLTARQVTFSKRRRGLFKKAQELSTLCDVDIGLIVFSATGKLFHYSN 59
                             68***********************************************85 PP
2K-box39.32.8e-14921591885
                    K-box  18 qqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkek 85 
                              +  +a L k   +  re+R+l GedL++L + +L +Le+ +e +l++i  kK+  l+e+  +l+++ +
  Itr_sc000106.1_g00014.1  92 SITYAGLAKDFTEKSRELRQLNGEDLQELGMADLVKLEKMVEGGLSRIMRKKEAKLMEENAQLKQRSE 159
                              55566677777777799**********************************************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006627.698161IPR002100Transcription factor, MADS-box
SMARTSM004322.1E-36160IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-24323IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.15E-28375IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
CDDcd002653.49E-37369No hitNo description
PfamPF003192.3E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-242338IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-243859IPR002100Transcription factor, MADS-box
PROSITE profilePS512978.54388188IPR002487Transcription factor, K-box
PfamPF014861.8E-994160IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MVRTKIEIKK IDNLTARQVT FSKRRRGLFK KAQELSTLCD VDIGLIVFSA TGKLFHYSNS  60
SMEEVITRHS MHMEKGDECV EHQPSPSLQR ESITYAGLAK DFTEKSRELR QLNGEDLQEL  120
GMADLVKLEK MVEGGLSRIM RKKEAKLMEE NAQLKQRSEI AVQGGPHSSE SVTNGCCFPD  180
KLQDHYKNSD TSLKLGLPFP D
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A6e-18174174MEF2C
5f28_B6e-18174174MEF2C
5f28_C6e-18174174MEF2C
5f28_D6e-18174174MEF2C
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019173225.11e-130PREDICTED: MADS-box protein JOINTLESS-like
RefseqXP_019173228.11e-130PREDICTED: MADS-box protein JOINTLESS-like
TrEMBLA0A484N4X21e-91A0A484N4X2_9ASTE; Uncharacterized protein
STRINGPGSC0003DMT4000837391e-73(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9382377
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24540.16e-55AGAMOUS-like 24