PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000105.1_g00007.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB
Protein Properties Length: 327aa    MW: 36565.9 Da    PI: 6.5568
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000105.1_g00007.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.81.1e-171360148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                             rg W++eEde+l++ ++ +G g+W+++++  g+ R++k+c++rw +yl
  Itr_sc000105.1_g00007.1 13 RGLWSPEEDEKLIQHITSHGHGCWSAVPKLAGLQRCGKSCRLRWINYL 60
                             788*******************************************97 PP
2Myb_DNA-binding52.51.2e-1666109146
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                              rg++T++E+  ++d+++ lG++ W+ Ia++++ gRt++++k++w++
  Itr_sc000105.1_g00007.1  66 RGSFTEQEERTIIDVHRILGNR-WAQIAKHLP-GRTDNEVKNFWNS 109
                              89********************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.8E-27463IPR009057Homeodomain-like
PROSITE profilePS5129418.217860IPR017930Myb domain
SuperFamilySSF466895.24E-2910107IPR009057Homeodomain-like
SMARTSM007173.4E-131262IPR001005SANT/Myb domain
PfamPF002491.8E-151360IPR001005SANT/Myb domain
CDDcd001674.68E-121660No hitNo description
PROSITE profilePS5129426.13661115IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.9E-2564116IPR009057Homeodomain-like
SMARTSM007176.4E-1665113IPR001005SANT/Myb domain
PfamPF002492.5E-1566109IPR001005SANT/Myb domain
CDDcd001673.36E-1268108No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MGHHCCSKQK VKRGLWSPEE DEKLIQHITS HGHGCWSAVP KLAGLQRCGK SCRLRWINYL  60
RPDLKRGSFT EQEERTIIDV HRILGNRWAQ IAKHLPGRTD NEVKNFWNSC IKKKLIAQGL  120
DPNTHNLLSP NQSKNNIHKP PNKNSYHHHH QLSPPSTFTI DTTAPHTIKE VIPMGMKAAL  180
SSITPPFHQP VDYTNSMIPT SNDQNFDYQN PTTIMDFGSC SSSMESTTSS LIAAAGFGIM  240
AGNESAVFGT DTAFEAAAQG FEPLRTQEEP QEQEDQVYKV NSDEFNNGGQ NMFDAASSFD  300
FEFMDAALMP CGVYSNVNPI DQLAWDC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-32131157108B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019168677.11e-177PREDICTED: transcription factor MYB86-like isoform X1
TrEMBLA0A2G2YJS61e-130A0A2G2YJS6_CAPAN; Protein ODORANT1
STRINGXP_009783085.11e-120(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12720.12e-82myb domain protein 67