PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000104.1_g00013.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

Protein Properties

Length: 933aa MW: 102600 Da PI: 7.9711

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000104.1_g00013.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	44.7	2.4e-14	353	434	1	79
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDf 79 f+k l+ sd++k grlvlpkk+ae++ ++++e+ l+++d++g++W +++++ +++s++yvl+ G ++ +L++gD+ Itr_sc000104.1_g00013.1 353 FEKMLSASDAGKIGRLVLPKKCAEAYfpPISHPEGLPLKVQDLKGQEWLFQFRFwpNNNSRMYVLE-GVTPCMQSMQLQAGDI 434 89************************555666777***********99899999999.**************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	4.19E-15	350	434	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	1.3E-23	350	434	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.54E-17	351	434	No hit	No description
SMART	SM01019	1.6E-11	353	450	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.4E-11	353	434	IPR003340	B3 DNA binding domain
PROSITE profile	PS51050	13.476	629	679	IPR011124	Zinc finger, CW-type
Pfam	PF07496	6.2E-11	634	676	IPR011124	Zinc finger, CW-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 933 aa Download sequence Send to blast
MSTSSTQPSN VCFNSNCKEV SEQPRKGWRR RTGEFADLCD RCASYYSTSY WHVPSSFALS 60 SAYEEGKFCE TFHLNASGWR SCESCGKQIH CGCIVSFHTF VLLDAGGIEC ITCARKSFIL 120 TPNPAWPPPS DFLPLQPEGI KDSRSWTPIA GSGPVPWRQA PSLFNGSVIQ TKLQPKTPYG 180 DITGCIDRLH LNERPPVSSL ENKRKEENSG SLLNRSLKSC VSGRLENEHT GFSCSEQSNS 240 FLSGTQQTSL SKNDFSAPNF RLTVSSTPKK EASDRSKVFA THIQPTTLSP SVGKQSCSQN 300 GTDSSGEAQM RNVRSRGDGG GKHHLLPRYW PRITDQELQQ ISGDTNSVIT PLFEKMLSAS 360 DAGKIGRLVL PKKCAEAYFP PISHPEGLPL KVQDLKGQEW LFQFRFWPNN NSRMYVLEGV 420 TPCMQSMQLQ AGDIGGEITK SPEKKRYEKS QMEFRQFVKA RVVVDDIVVS WASSMGLFGF 480 ALVTFSRIEP EGKLVMGCRK ASATPSAHQG YGTSNSPIGV PTNGNASTKN IKPGEIVTKC 540 SIKAKEVVET KPPVRSKRKN SSLNSKSKRL KVDCEELIEL KLTVVQAQQL MRPSPNDTPT 600 VIVIEGCDFE EYEDAPIIGR PTIPSTGSLG EKIQWVQCED CFKWRKIPDD ALLPGRWTCA 660 ENLWDPDRSV CSAVEELTVE CLADLVPTIG KAPKKMKASK QDMNSPDTIE GLDALANLAI 720 QEEGEGVLAS SSQATTKHPR HRPGCTCIVC IQPPSGKGPK HKQQCDCNVC KSVKRRFKTL 780 MMKKGKKLSE KEAEAAANVN SPCSDAGAIS PTHEEPNSES CLDDTNDIIE KKSSPSPIKG 840 EIDLNMKPER EDLSPRCDSG GVMRFLQDAA ERFIWQRGLP SSYANGNPVG HEVQERVNLN 900 NCGSDGSHQK TSDSDRHMAL SIDNVSSVVQ AEK

Sequence ? help Back to Top

Protein Sequence Length: 933 aa Download sequence Send to blast

MSTSSTQPSN VCFNSNCKEV SEQPRKGWRR RTGEFADLCD RCASYYSTSY WHVPSSFALS  60
SAYEEGKFCE TFHLNASGWR SCESCGKQIH CGCIVSFHTF VLLDAGGIEC ITCARKSFIL  120
TPNPAWPPPS DFLPLQPEGI KDSRSWTPIA GSGPVPWRQA PSLFNGSVIQ TKLQPKTPYG  180
DITGCIDRLH LNERPPVSSL ENKRKEENSG SLLNRSLKSC VSGRLENEHT GFSCSEQSNS  240
FLSGTQQTSL SKNDFSAPNF RLTVSSTPKK EASDRSKVFA THIQPTTLSP SVGKQSCSQN  300
GTDSSGEAQM RNVRSRGDGG GKHHLLPRYW PRITDQELQQ ISGDTNSVIT PLFEKMLSAS  360
DAGKIGRLVL PKKCAEAYFP PISHPEGLPL KVQDLKGQEW LFQFRFWPNN NSRMYVLEGV  420
TPCMQSMQLQ AGDIGGEITK SPEKKRYEKS QMEFRQFVKA RVVVDDIVVS WASSMGLFGF  480
ALVTFSRIEP EGKLVMGCRK ASATPSAHQG YGTSNSPIGV PTNGNASTKN IKPGEIVTKC  540
SIKAKEVVET KPPVRSKRKN SSLNSKSKRL KVDCEELIEL KLTVVQAQQL MRPSPNDTPT  600
VIVIEGCDFE EYEDAPIIGR PTIPSTGSLG EKIQWVQCED CFKWRKIPDD ALLPGRWTCA  660
ENLWDPDRSV CSAVEELTVE CLADLVPTIG KAPKKMKASK QDMNSPDTIE GLDALANLAI  720
QEEGEGVLAS SSQATTKHPR HRPGCTCIVC IQPPSGKGPK HKQQCDCNVC KSVKRRFKTL  780
MMKKGKKLSE KEAEAAANVN SPCSDAGAIS PTHEEPNSES CLDDTNDIIE KKSSPSPIKG  840
EIDLNMKPER EDLSPRCDSG GVMRFLQDAA ERFIWQRGLP SSYANGNPVG HEVQERVNLN  900
NCGSDGSHQK TSDSDRHMAL SIDNVSSVVQ AEK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j9a_A	7e-55	331	502	2	125	B3 domain-containing transcription repressor VAL1
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	556	570	KRKNSSLNSKSKRLK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019162403.1	0.0	PREDICTED: B3 domain-containing protein Os07g0563300 isoform X1
Refseq	XP_019162404.1	0.0	PREDICTED: B3 domain-containing protein Os07g0563300 isoform X1
TrEMBL	A0A1J6ILC5	0.0	A0A1J6ILC5_NICAT; B3 domain-containing protein
STRING	XP_009616960.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7128	21	26

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G32010.1	1e-157	HSI2-like 1