PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc000103.1_g00055.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | NF-YA | ||||||||
Protein Properties | Length: 328aa MW: 35328.2 Da PI: 9.5695 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 93.4 | 2.8e-29 | 163 | 218 | 2 | 58 |
CBFB_NFYA 2 eplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 p++VN+KQy++I++RR++Rak+e + + ksrkpylh SRh hA+rRpRg+gGrF Itr_sc000103.1_g00055.1 163 GPIFVNPKQYHGIIRRRKSRAKAEMANVV-PKSRKPYLHLSRHLHAMRRPRGCGGRF 218 69***********************8877.**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 3.2E-33 | 160 | 221 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 34.83 | 161 | 221 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 2.6E-21 | 164 | 186 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 1.5E-26 | 164 | 218 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 2.6E-21 | 195 | 218 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 328 aa Download sequence Send to blast |
MTMHSVISKE NEGMVQNPIA ISPTTVPWWG GITVQSASCV ETLGHLMALS VEQPASGDQA 60 IGGKQVGRGV EQQLPKGNTG QFAIVPGDCK SSANLQKFSQ VQGAASVQPA SVEYRGPFEF 120 GFGQPLICTK YPYGEQCYRL YTAYGPQVAG RIMLPLNLTS NEGPIFVNPK QYHGIIRRRK 180 SRAKAEMANV VPKSRKPYLH LSRHLHAMRR PRGCGGRFLN TGNAKGSCKD SSGNTKTAAE 240 GQISPISEVL QSDSSRNLSS PGSHNFGSEV TSLFSREDQD LDPFPTTRLR SPLLALPDLM 300 NAGHSILTAP GKWMVSAAAA DNCCNLKI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4g91_A | 2e-16 | 162 | 219 | 2 | 60 | HAPB protein |
4g92_A | 2e-16 | 162 | 219 | 2 | 60 | HAPB protein |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019187066.1 | 0.0 | PREDICTED: nuclear transcription factor Y subunit A-10-like isoform X1 | ||||
Refseq | XP_019187067.1 | 0.0 | PREDICTED: nuclear transcription factor Y subunit A-10-like isoform X1 | ||||
TrEMBL | A0A2R6QVS9 | 1e-110 | A0A2R6QVS9_ACTCH; Nuclear transcription factor Y subunit A-10 like | ||||
STRING | PGSC0003DMT400055061 | 1e-103 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3706 | 23 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06510.2 | 7e-48 | nuclear factor Y, subunit A10 |