PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000102.1_g00019.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

NAC

Protein Properties

Length: 493aa MW: 54103.1 Da PI: 4.3903

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000102.1_g00019.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	154.8	3.7e-48	119	245	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWka 85 + Gf+FhPtdeelvv++L++kv ++++++ e+i+evdiy++ePw+L+ +v+++e ew+fF++++kky +g++ nrat +g+Wka Itr_sc000102.1_g00019.1 119 AYGFKFHPTDEELVVYFLRRKVLRRPFPF-EAIAEVDIYNFEPWELQgFcAVDSREAEWHFFTRTEKKYINGSKINRATINGFWKA 203 67*************************.89**********95347778888************************* PP NAM 86 tgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 tg+d++v++ k++ vglkktLv++ grap g++tdW+mheyrl Itr_sc000102.1_g00019.1 204 TGRDRAVHH-KSQIVGLKKTLVYHAGRAPAGKRTDWLMHEYRL 245 *****.999**************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.83E-53	108	269	IPR003441	NAC domain
PROSITE profile	PS51005	52.005	118	269	IPR003441	NAC domain
Pfam	PF02365	3.3E-23	120	245	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 493 aa Download sequence Send to blast
MAAAEEQTVV AAAAEEQPVV AAMDEGMAAE EQQVVAAIGE GAQEQAQAQA QAETETPFVA 60 VMGEGSQAQA QTEAPFVAAM GERSQAQAQA EAPFVAAMGE GSQAQAPFVA AMMPKPKLAY 120 GFKFHPTDEE LVVYFLRRKV LRRPFPFEAI AEVDIYNFEP WELQGFCAVD SREAEWHFFT 180 RTEKKYINGS KINRATINGF WKATGRDRAV HHKSQIVGLK KTLVYHAGRA PAGKRTDWLM 240 HEYRLSEQEL DKAGVQQKDA YYICKVYLKK DAMGRRGVPF NVEDWENHTG ILIPCEDNNA 300 EDEASEVNLQ GGSTSKAVQL PEKAQGFKSL RIRAREEDDD DTDDDDDETE DDEAIVCLDK 360 GKKPKLMLDF FSGAGGKGDS DDDSSSATIS DSLTPDFSSG PLNFSLTAKP KEKENRGSAA 420 PNNAGGAFNS SCLENSLPPG YLKFITDLEE ERDSLKHQLM NSEATVSCLQ AENEEMAEEI 480 MRLRSLLPGQ GSD

Sequence ? help Back to Top

Protein Sequence Length: 493 aa Download sequence Send to blast

MAAAEEQTVV AAAAEEQPVV AAMDEGMAAE EQQVVAAIGE GAQEQAQAQA QAETETPFVA  60
VMGEGSQAQA QTEAPFVAAM GERSQAQAQA EAPFVAAMGE GSQAQAPFVA AMMPKPKLAY  120
GFKFHPTDEE LVVYFLRRKV LRRPFPFEAI AEVDIYNFEP WELQGFCAVD SREAEWHFFT  180
RTEKKYINGS KINRATINGF WKATGRDRAV HHKSQIVGLK KTLVYHAGRA PAGKRTDWLM  240
HEYRLSEQEL DKAGVQQKDA YYICKVYLKK DAMGRRGVPF NVEDWENHTG ILIPCEDNNA  300
EDEASEVNLQ GGSTSKAVQL PEKAQGFKSL RIRAREEDDD DTDDDDDETE DDEAIVCLDK  360
GKKPKLMLDF FSGAGGKGDS DDDSSSATIS DSLTPDFSSG PLNFSLTAKP KEKENRGSAA  420
PNNAGGAFNS SCLENSLPPG YLKFITDLEE ERDSLKHQLM NSEATVSCLQ AENEEMAEEI  480
MRLRSLLPGQ GSD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	1e-40	118	271	15	170	Stress-induced transcription factor NAC1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019196366.1	1e-125	PREDICTED: NAC domain-containing protein 55-like

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6050	23	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10490.1	2e-65	NAC domain containing protein 52