PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc000102.1_g00017.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | NAC | ||||||||
Protein Properties | Length: 162aa MW: 18308.6 Da PI: 8.1062 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 56.8 | 7.9e-18 | 9 | 58 | 2 | 50 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..k 50 pGfrFhPtdeel v+yL++kv++k++++ e+i+ vdiyk+ePw+L++ + Itr_sc000102.1_g00017.1 9 GPGFRFHPTDEELAVYYLRRKVRRKPFHV-EAIAVVDIYKHEPWELHAfcA 58 59***************************.89**************84332 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 9.29E-19 | 5 | 59 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 13.205 | 8 | 162 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.7E-9 | 10 | 64 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 162 aa Download sequence Send to blast |
MDLTYLRLGP GFRFHPTDEE LAVYYLRRKV RRKPFHVEAI AVVDIYKHEP WELHAFCAVN 60 TTDQSSGQAL GGHMRRHRNS TVAAAASQLS PSSSSLEKRV PQKEENNGKC LNLDLNLLPA 120 GEDNQDHRRA RDVPENQEQQ PPPVQPTLFL STTPPPVGCK YI |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019175886.1 | 2e-36 | PREDICTED: zinc finger protein ZAT5-like | ||||
TrEMBL | A0A328DHL2 | 4e-22 | A0A328DHL2_9ASTE; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4015 | 23 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G10480.1 | 7e-21 | NAC domain containing protein 50 |