PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000102.1_g00016.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

C2H2

Protein Properties

Length: 360aa MW: 38070.3 Da PI: 7.8087

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000102.1_g00016.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.3	0.00051	174	196	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C Cg++F++ L H +H Itr_sc000102.1_g00016.1 174 YECRTCGRTFPTFQALGGHRTSH 196 99**********99998888777 PP
2	zf-C2H2	14.3	0.00012	253	275	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg Fs+ L H+r+H Itr_sc000102.1_g00016.1 253 HECSYCGAEFSSGQALGGHMRRH 275 78********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.52E-6	172	201	No hit	No description
Pfam	PF13912	1.1E-10	173	198	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	12.778	174	201	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	4.8E-4	174	200	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	0.081	174	196	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	176	196	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	4.22E-6	250	280	No hit	No description
Pfam	PF13912	2.7E-12	253	276	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	11.531	253	280	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.01	253	275	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	255	275	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 360 aa Download sequence Send to blast
MDALEEVAGG PNQQLQDLSH IVKGKRTKRS RSTPHSPISF TMITATTTPP HSPPAGDAAD 60 NAATSAPIPA PPTPEDEDMA RCLMLLSQGG GGFSRHPPPA IPKSPIHKEE EIGGAYNNTG 120 GAWNNNGGAY NNGGGAWNNG GGGGGSKFCS KKYIETTTGG GGGGGGVKVG MYVYECRTCG 180 RTFPTFQALG GHRTSHTKEK APLTTAETGA AKRPLALYDE EDVNPYPFNK APKISSAPYH 240 FYDSANKSSP RIHECSYCGA EFSSGQALGG HMRRHRNSAP AAAASPLSPS SSSLEKRVPQ 300 KEENNGKCLN LDLNLLPAGE ENQDHRRARE LPENQEQQPP PVEPTLFLST TPPLVGCKYI

Sequence ? help Back to Top

Protein Sequence Length: 360 aa Download sequence Send to blast

MDALEEVAGG PNQQLQDLSH IVKGKRTKRS RSTPHSPISF TMITATTTPP HSPPAGDAAD  60
NAATSAPIPA PPTPEDEDMA RCLMLLSQGG GGFSRHPPPA IPKSPIHKEE EIGGAYNNTG  120
GAWNNNGGAY NNGGGAWNNG GGGGGSKFCS KKYIETTTGG GGGGGGVKVG MYVYECRTCG  180
RTFPTFQALG GHRTSHTKEK APLTTAETGA AKRPLALYDE EDVNPYPFNK APKISSAPYH  240
FYDSANKSSP RIHECSYCGA EFSSGQALGG HMRRHRNSAP AAAASPLSPS SSSLEKRVPQ  300
KEENNGKCLN LDLNLLPAGE ENQDHRRARE LPENQEQQPP PVEPTLFLST TPPLVGCKYI

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019196372.1	1e-150	PREDICTED: zinc finger protein ZAT5-like
TrEMBL	A0A328DHL2	1e-104	A0A328DHL2_9ASTE; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4015	23	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28200.1	7e-28	C2H2 family protein