PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000102.1_g00010.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

bHLH

Protein Properties

Length: 278aa MW: 30818.5 Da PI: 4.9904

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000102.1_g00010.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	17.7	6.4e-06	156	200	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++ r RR+ri ++ +eL +l+P +K++ ae+ + +YIk +q Itr_sc000102.1_g00010.1 156 SIAARERRRRIAEKTQELGKLIPGG-----QKMNTAEMFQAGYNYIKFMQ 200 677899***************86.....7**************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.465	150	199	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	6.0E-10	153	215	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	6.94E-10	154	214	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.8E-5	156	205	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 278 aa Download sequence Send to blast
MASLSYCSNW EISHDDHYLN FSETLDASGL VMTSPPFFPR QQTLVYDDQL DAPPPPAELI 60 FGFNNRSFHL PEESSLFPFD PLFNSGEIVS AAPYFRTFLY SKIXKPPAPP PSSSLARESL 120 LPELPIPAYC DGGETEVAAK KNDGGKCGVK TLSAQSIAAR ERRRRIAEKT QELGKLIPGG 180 QKMNTAEMFQ AGYNYIKFMQ TQLSVLQSCH HSSQESGETY MSQELETLVG SVLIQEKLYS 240 NDKCLVPQKF IQSLPNAHQL DQASPPSVDT KLNSDPIS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019196373.1	1e-122	PREDICTED: transcription factor bHLH52-like
TrEMBL	A0A328D5H0	1e-49	A0A328D5H0_9ASTE; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3856	22	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30670.1	2e-23	bHLH family protein