PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc000100.1_g00044.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | ERF | ||||||||
Protein Properties | Length: 276aa MW: 30970.7 Da PI: 8.8777 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65.9 | 8.1e-21 | 132 | 181 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+W+AeIrdp+ + +r++lg+f taeeAa+a+++a+ +++g Itr_sc000100.1_g00044.1 132 NYRGVRQRP-WGKWAAEIRDPR----KaARVWLGTFNTAEEAARAYDRAAIEFRG 181 59*******.**********94....36************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 24.974 | 132 | 189 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.3E-32 | 132 | 189 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.5E-39 | 132 | 195 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 6.1E-15 | 132 | 181 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.19E-23 | 132 | 189 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 3.8E-12 | 133 | 144 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.39E-32 | 133 | 188 | No hit | No description |
PRINTS | PR00367 | 3.8E-12 | 155 | 171 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 276 aa Download sequence Send to blast |
MQRIPKRVKQ AEVFSSAQAP PRLTGEEEYS VMVTALKHVI DGSAAAMESN FDHFFTPFQS 60 LSAASTFTST AASWPPSTAR TELPPVFRVP EGHTCQFCEI KGCLGCNFFG APEIGAEDKN 120 KKKNAGKKKK KNYRGVRQRP WGKWAAEIRD PRKAARVWLG TFNTAEEAAR AYDRAAIEFR 180 GPRAKLNFSF TDYTSYAPLE QSTSSVSSSH HHPPPQPLYL QQQQQQSPQN MEFLAGTRKE 240 KQVWESAGEQ DFQDWMMMMD FNADSSDSAS GNLHSF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 6e-23 | 129 | 188 | 2 | 62 | ATERF1 |
3gcc_A | 6e-23 | 129 | 188 | 2 | 62 | ATERF1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 125 | 131 | GKKKKKN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019165279.1 | 1e-127 | PREDICTED: ethylene-responsive transcription factor ERF109-like | ||||
Swissprot | Q9SZ06 | 4e-37 | EF109_ARATH; Ethylene-responsive transcription factor ERF109 | ||||
TrEMBL | A0A1S4CMZ7 | 2e-77 | A0A1S4CMZ7_TOBAC; ethylene-responsive transcription factor ERF109-like | ||||
STRING | XP_009609381.1 | 1e-77 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G34410.1 | 9e-32 | redox responsive transcription factor 1 |
Publications ? help Back to Top | |||
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