PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc000099.1_g00013.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | MYB | ||||||||
Protein Properties | Length: 168aa MW: 19618.1 Da PI: 7.753 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 28.5 | 3.4e-09 | 15 | 59 | 3 | 45 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 +WT Ed+ + + ++G + +W +Ia+ ++ +t+ ++ ++q Itr_sc000099.1_g00013.1 15 NWTRHEDKMFEVGLVRYGEEridRWVKIAELLP-LKTARDVEQHYQ 59 8******************9*************.9**********9 PP | |||||||
2 | Myb_DNA-binding | 52.4 | 1.2e-16 | 99 | 143 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 WT+eE+++++++ +++G+g+Wk+Iar k+R++ q+ s+ qky Itr_sc000099.1_g00013.1 99 QWTAEEHKRFLEGLNRYGKGDWKSIARQCVKTRSATQVASHAQKY 143 5*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 4.3E-8 | 12 | 64 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 4.97E-10 | 14 | 67 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 6.946 | 15 | 62 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-5 | 15 | 62 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 7.0E-7 | 15 | 59 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.65E-7 | 15 | 62 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 6.6E-11 | 91 | 150 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.017 | 92 | 148 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.21E-18 | 93 | 149 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 6.5E-16 | 95 | 146 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 7.5E-7 | 96 | 146 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.5E-13 | 99 | 143 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.63E-9 | 100 | 144 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 168 aa Download sequence Send to blast |
MDYSASLWMD NSSPNWTRHE DKMFEVGLVR YGEERIDRWV KIAELLPLKT ARDVEQHYQI 60 LLADVADIDA GLIEVPNYLD NPVLSDEKKG KEPRKQAHQW TAEEHKRFLE GLNRYGKGDW 120 KSIARQCVKT RSATQVASHA QKYFIHLEKD AKNRTKKRSS IYDVSLDD |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019183150.1 | 1e-113 | PREDICTED: transcription factor DIVARICATA-like | ||||
TrEMBL | A0A484MT95 | 4e-75 | A0A484MT95_9ASTE; Uncharacterized protein | ||||
STRING | XP_004141984.1 | 3e-46 | (Cucumis sativus) | ||||
STRING | XP_004160951.1 | 3e-46 | (Cucumis sativus) | ||||
STRING | XP_009795456.1 | 9e-47 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4547 | 22 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04760.1 | 1e-44 | MYB family protein |