PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000098.1_g00039.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MYB

Protein Properties

Length: 325aa MW: 35245.2 Da PI: 5.4755

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000098.1_g00039.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	63.1	5.5e-20	12	57	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+WT+eEd lv++v+q+G+++W++I+ ++ gR++k+c++rw + Itr_sc000098.1_g00039.1 12 KGSWTPEEDATLVKLVEQHGPRNWSLISTGIP-GRSGKSCRLRWCNQ 57 799***************************.*********985 PP
2	Myb_DNA-binding	52.4	1.2e-16	66	108	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++++eEd +++a++ +G++ W++Iar ++ gRt++ +k++w++ Itr_sc000098.1_g00039.1 66 PFSPEEDAVILRAHAVHGNR-WAAIARLLP-GRTDNAIKNHWNST 108 89****************.*****.*********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	25.711	1	62	IPR017930	Myb domain
SuperFamily	SSF46689	4.49E-31	10	105	IPR009057	Homeodomain-like
SMART	SM00717	1.0E-16	11	60	IPR001005	SANT/Myb domain
Pfam	PF00249	3.6E-19	12	57	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.3E-25	13	65	IPR009057	Homeodomain-like
CDD	cd00167	1.28E-15	14	56	No hit	No description
PROSITE profile	PS51294	21.85	63	113	IPR017930	Myb domain
SMART	SM00717	3.6E-15	63	111	IPR001005	SANT/Myb domain
CDD	cd00167	1.69E-12	66	109	No hit	No description
Gene3D	G3DSA:1.10.10.60	4.6E-23	66	112	IPR009057	Homeodomain-like
Pfam	PF00249	1.8E-14	66	108	IPR001005	SANT/Myb domain
Pfam	PF13456	2.6E-6	250	309	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 325 aa Download sequence Send to blast
MEDGGGVGGR VKGSWTPEED ATLVKLVEQH GPRNWSLIST GIPGRSGKSC RLRWCNQLSP 60 AVQHRPFSPE EDAVILRAHA VHGNRWAAIA RLLPGRTDNA IKNHWNSTLR RRKRSAEDAP 120 PQAAAVDKRA CLDESSAESK SEEQRKIGGG GAEDVLRLDA PETLLXSEEQ RKIGGGGAED 180 VLRLDAPETL LSLFPPGGKA AVGENSAAEE EEEEPPPSSV SDDGKEGGSK VEIEIKDTCL 240 LIMHRMIAQE GLIVAFHRGF THIVAESDSE ALVNAMDKDS GGDKFDSTLV ADCKALTRQF 300 RECNTTHLTK TVIFVNTKNL SWLAQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gv2_A	1e-38	11	112	3	104	MYB PROTO-ONCOGENE PROTEIN
1h88_C	4e-38	11	112	57	158	MYB PROTO-ONCOGENE PROTEIN
1h89_C	4e-38	11	112	57	158	MYB PROTO-ONCOGENE PROTEIN
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019191767.1	1e-115	PREDICTED: transcription factor MYB44-like
TrEMBL	A0A314L8L3	1e-77	A0A314L8L3_NICAT; Transcription factor myb44
STRING	XP_009785340.1	8e-76	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12883	16	20

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37260.1	2e-51	myb domain protein 73