PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000096.1_g00005.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family EIL
Protein Properties Length: 476aa    MW: 54265 Da    PI: 4.7112
Description EIL family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000096.1_g00005.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1EIN3394.61.4e-120373712353
                              XXXXXXXXXXXXXXXXXXXXXX..XXXXX.....XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
                     EIN3   2 elkkrmwkdqmllkrlkerkkqlledkeaa....tgakksnksneqarrkkmsraQDgiLkYMlkemevcnaqGfvYgiipekgkp 83 
                              +lkkrmwkd+ l++++k++++   + ke       +++ s+k  e++rrkkm+r+QD++LkYM+k+mevc+ qGfvYgi+pekgkp
  Itr_sc000096.1_g00005.1  37 DLKKRMWKDRLLMQKIKGEREAAAAGKEGIfrdpGEESASEKQVEASRRKKMARSQDAVLKYMVKIMEVCKGQGFVYGIVPEKGKP 122
                              89**********************99999888877888899********************************************* PP

                              XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XX----STTS-HHHHHHHHHHHSSSSSS-TTS--TTT--H CS
                     EIN3  84 vegasdsLraWWkekvefdrngpaaiskyqaknlilsgesslqtersseshslselqDTtlgSLLsalmqhcdppqrrfplekgve 169
                              v+g+sdsLr+WWkekv+fd+n+p ai++y +k + l  e+     +ss    l++lqDTtlgSL+salmqhc ppqr+fplekg++
  Itr_sc000096.1_g00005.1 123 VTGSSDSLREWWKEKVKFDKNAPEAIAEYLPKLVGLV-EDP----NSSIIYLLQDLQDTTLGSLMSALMQHCLPPQRKFPLEKGLA 203
                              *****************************55444444.333....3577999********************************** PP

                              HHH---S--HHHHHHT--TT--.-----GGG--HHHHHHHHHHHHHHTGGGHHHHHHTTTTSSSSTTT--SHHHHHHHHHHTTTTT CS
                     EIN3 170 pPWWPtGkelwwgelglskdqgtppykkphdlkkawkvsvLtavikhmsptieeirelerqskylqdkmsakesfallsvlnqeek 255
                              pPWWPtG elwwg +g+++++g+ppykkphdlkkawk+svL+a +khmsp+++++r+l+ qsk+lq+kmsak++ ++++++ +ee+
  Itr_sc000096.1_g00005.1 204 PPWWPTGAELWWGDQGTAQEHGPPPYKKPHDLKKAWKISVLAAIVKHMSPDLDRMRRLVKQSKSLQNKMSAKDTTTWSKIVTREED 289
                              *************************************************************************************9 PP

                              -S--XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX......XXXXXXX.XXXX CS
                     EIN3 256 ecatvsahssslrkqspkvtlsceqkedvegkkeskikhvqavkttagfpvvrkrkkkpsesakvsskevsrtcqssqfrgsetel 341
                              +++            ++++ + +++++d+++++ +       ++  ++   ++krk  ++++ ++++    + cq+ q+++s   +
  Itr_sc000096.1_g00005.1 290 LVK----------LAQKALRITDQEDQDSDQDSLRI----TDQDFDQDSLKHDKRKCTFEREIATEIA--LYACQNLQCPQSGLGF 359
                              873..........25677888888777776444443....4455555777888888655555555555..8*************** PP

                              XXXXXXXXXXXX CS
                     EIN3 342 ifadknsisqne 353
                              +f+dk+s++++e
  Itr_sc000096.1_g00005.1 360 GFPDKTSRTEHE 371
                              *********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF048733.4E-11437288No hitNo description
Gene3DG3DSA:1.10.3180.103.2E-64164293IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
SuperFamilySSF1167688.11E-57168290IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0080167Biological Processresponse to karrikin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 476 aa     Download sequence    Send to blast
MVKFHGELDP MSPGSDMEMT LEEEEEEEEM EEISYGDLKK RMWKDRLLMQ KIKGEREAAA  60
AGKEGIFRDP GEESASEKQV EASRRKKMAR SQDAVLKYMV KIMEVCKGQG FVYGIVPEKG  120
KPVTGSSDSL REWWKEKVKF DKNAPEAIAE YLPKLVGLVE DPNSSIIYLL QDLQDTTLGS  180
LMSALMQHCL PPQRKFPLEK GLAPPWWPTG AELWWGDQGT AQEHGPPPYK KPHDLKKAWK  240
ISVLAAIVKH MSPDLDRMRR LVKQSKSLQN KMSAKDTTTW SKIVTREEDL VKLAQKALRI  300
TDQEDQDSDQ DSLRITDQDF DQDSLKHDKR KCTFEREIAT EIALYACQNL QCPQSGLGFG  360
FPDKTSRTEH EQICPHRPDQ NLVDFGKNYV SSLITEGDDI DTGQFPDWIN EDIQRIFHEY  420
NAQFVNGGAG NYGNLLTDNL TEQQQFRYDP PMASEEASTS GSTSVWDLAY DDIDRD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4zds_A5e-541652921128Protein ETHYLENE INSENSITIVE 3
4zds_B5e-541652921128Protein ETHYLENE INSENSITIVE 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor that may be involved in the ethylene response pathway. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019182837.10.0PREDICTED: putative ETHYLENE INSENSITIVE 3-like 4 protein
SwissprotQ9LX161e-135EIL4_ARATH; Putative ETHYLENE INSENSITIVE 3-like 4 protein
TrEMBLA0A328E5281e-180A0A328E528_9ASTE; Uncharacterized protein
STRINGXP_009792280.11e-169(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA30423178
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10120.11e-133EIL family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Jeong HJ,Choi JY,Shin HY,Bae JM,Shin JS
    Seed-specific expression of seven Arabidopsis promoters.
    Gene, 2014. 553(1): p. 17-23
    [PMID:25261846]