PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000095.1_g00013.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family GRAS
Protein Properties Length: 592aa    MW: 65056.9 Da    PI: 4.8511
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000095.1_g00013.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS354.61.6e-1082255912373
                     GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn.sseelaalklfse 86 
                               ++L++cA+ +++++ e+a + L r+++ +s+ gdp++R+a yf eAL +rl++       + + ++++ +  s+e + ++k++++
  Itr_sc000095.1_g00013.1 225 LKALVDCAR-LADSQPENAVKSLIRIRDSVSQLGDPTERVAYYFSEALYNRLSN-------SPEKRPANFEAcSEELTLSYKALND 302
                              689******.566689999999*******************************9.......222233322233889999******* PP

                     GRAS  87 vsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleetgerLakfA 169
                              ++P+ kf+hltaNqaIlea+e+++++HiiDf+i qG+QW+aLlqaLa+R++g+p s+Ri g+ sp  g   + +l +tg+rL++fA
  Itr_sc000095.1_g00013.1 303 ACPYSKFAHLTANQAILEATEKASKIHIIDFGIVQGIQWAALLQALATRSGGKPdSIRISGIPSPVLGnsPAASLLATGNRLRDFA 388
                              **************************************************88777*********9988889999************ PP

                     GRAS 170 eelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFle 255
                              + l+++fef++ v   +++l+ +++rv+p+E laVn++lql++llde++++     + Lkl +sl+P +v++ e e+++n+  Fl+
  Itr_sc000095.1_g00013.1 389 KVLDLNFEFEP-VLAPIHSLNGSSFRVDPDEILAVNFMLQLYNLLDETTATVG---TALKLANSLNPSIVTLGEYEMSLNRVGFLN 470
                              ***********.799*******************************9999999...9***************************** PP

                     GRAS 256 rflealeyysalfdsleaklpreseerikvErellgreivnvvacegae.rrerhetlekWrerleeaGFkpvplsekaakqakll 340
                              rf +al+yysa+f+sl+ ++ r+s er+kvE  llgr+i ++v  e++  ++e  e + +Wr  +e+aGFk+v++s++a +qak l
  Itr_sc000095.1_g00013.1 471 RFKNALKYYSAIFESLDPNMTRDSPERVKVESLLLGRRIAELVRPEEQGaKTECVEDKDHWRILMESAGFKAVAISHYAHSQAKIL 556
                              *******************************************99887659999******************************** PP

                     GRAS 341 lrkvk.sdgyrveeesgslv.lgWkdrpLvsvSaW 373
                              l +++ s  y++ ++   ++ l W+d+pL++vS+W
  Itr_sc000095.1_g00013.1 557 LWNYNySSSYSLIDSPPGFLsLAWNDEPLLTVSSW 591
                              *****9999999877666655************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098558.316198570IPR005202Transcription factor GRAS
PfamPF035145.4E-106225591IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 592 aa     Download sequence    Send to blast
MAYMCTDSGN LMAIAQQVIQ QKQQQQQEQQ QQQQKEQQQQ QLLGLNSFCL NPWSAGFNGG  60
FSGHAFADPF QVPAAVESGF QFPSLDNQLG AFRFPDFGGG GGEFDSDEWM EGLMDGGDST  120
ASSNLHSACD TWHNNSDFTS LYAADPFSAC PSRLRIASSS PSALNSVIFT DNQKNQNHVP  180
PPPQTLPWFP TPPPPSAKDS KQTAQRNDVV AEGSSPESLS SKPLLKALVD CARLADSQPE  240
NAVKSLIRIR DSVSQLGDPT ERVAYYFSEA LYNRLSNSPE KRPANFEACS EELTLSYKAL  300
NDACPYSKFA HLTANQAILE ATEKASKIHI IDFGIVQGIQ WAALLQALAT RSGGKPDSIR  360
ISGIPSPVLG NSPAASLLAT GNRLRDFAKV LDLNFEFEPV LAPIHSLNGS SFRVDPDEIL  420
AVNFMLQLYN LLDETTATVG TALKLANSLN PSIVTLGEYE MSLNRVGFLN RFKNALKYYS  480
AIFESLDPNM TRDSPERVKV ESLLLGRRIA ELVRPEEQGA KTECVEDKDH WRILMESAGF  540
KAVAISHYAH SQAKILLWNY NYSSSYSLID SPPGFLSLAW NDEPLLTVSS WH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-1542215921375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development (By similarity). Involved in environmental abiotic stress resistance. May increase the expression of stress-responsive genes (PubMed:20616154). Binds DNA in vitro (By similarity). {ECO:0000250|UniProtKB:Q53K16, ECO:0000250|UniProtKB:Q9SCR0, ECO:0000269|PubMed:20616154}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by drought and high salt stresses, and down-regulated by gibberellic acid (GA) treatment, but not by plant hormone abscisic acid (ABA) application in leaves. Under the salt treatment, expression is induced quickly, and it peaks at 3 hours. Under the drought treatment, the expression is not induced immediately, but reaches its maximum at 3 hours. Under the GA treatment, the expression becomes weaker within 5 hours. {ECO:0000269|PubMed:20616154}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019182848.10.0PREDICTED: scarecrow-like protein 4
SwissprotA0A024B7I00.0SCL7_POPEU; SCARECROW-LIKE protein 7
TrEMBLM1B7420.0M1B742_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000385740.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA89052429
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66770.10.0GRAS family protein