PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc000088.1_g00027.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | MYB | ||||||||
Protein Properties | Length: 219aa MW: 24958.8 Da PI: 6.3956 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 58.3 | 1.8e-18 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd++l+++++++G g+W+ I++ g+ R++k+c++rw +yl Itr_sc000088.1_g00027.1 14 KGPWSKEEDQILINYINKYGHGNWRQIPKNAGLVRCGKSCRLRWMNYL 61 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 46.1 | 1.1e-14 | 67 | 110 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg +T eE+ + v+++k +G++ W++Ia++++ gRt++++k+ w++ Itr_sc000088.1_g00027.1 67 RGHFTHEEESIVVKLHKTFGNR-WASIAARLP-GRTDNEIKNIWHT 110 899*******************.*********.*********9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.2E-26 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 25.424 | 9 | 65 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.95E-31 | 12 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.0E-17 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.1E-17 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.27E-14 | 16 | 61 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 9.1E-25 | 65 | 116 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 19.473 | 66 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 5.4E-13 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.4E-13 | 67 | 110 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 9.16E-10 | 70 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 219 aa Download sequence Send to blast |
MGRAPCCDKT AVKKGPWSKE EDQILINYIN KYGHGNWRQI PKNAGLVRCG KSCRLRWMNY 60 LRPGIKRGHF THEEESIVVK LHKTFGNRWA SIAARLPGRT DNEIKNIWHT RLKKRLHDFD 120 NQVAGDTLNN DGASNFAAAE DNDPSGGLAG LLTQSDFPLG DDDQFWPQIN DKSGFEFNGA 180 DFNPTMDNDD VGGVDPGRLQ FWQDHLLTWT DDEFLDLWK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-29 | 14 | 116 | 7 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that regulates freezing tolerance by affecting expression of CBF genes. {ECO:0000269|PubMed:24415840}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salicylic acid (SA), jasmonic acid (JA), salt (NaCl), ethylene and auxin (IAA) (PubMed:16463103). Down-regulated by cold treatment (PubMed:24415840). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:24415840}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019162251.1 | 1e-113 | PREDICTED: myb-related protein Myb4-like | ||||
Swissprot | Q9SJX8 | 2e-63 | MYB14_ARATH; Transcription factor MYB14 | ||||
TrEMBL | A0A1R3K7M8 | 1e-64 | A0A1R3K7M8_COCAP; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G31180.1 | 8e-66 | myb domain protein 14 |
Publications ? help Back to Top | |||
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