PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc000088.1_g00024.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | ERF | ||||||||
Protein Properties | Length: 129aa MW: 14387.2 Da PI: 5.3432 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.3 | 9.3e-19 | 13 | 63 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpse.ngkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr ++ +g++ +eIrd + ng r++lg+++taeeAa+a+++a+ ++g Itr_sc000088.1_g00024.1 13 KYRGVRKRP-WGKYGVEIRDS-NrNG--VRVWLGTYDTAEEAARAYDRAAYGMRG 63 8********.**********4.4254..**********************99998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 9.9E-13 | 13 | 63 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.853 | 13 | 71 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.6E-29 | 13 | 72 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.75E-22 | 13 | 72 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 5.94E-18 | 13 | 71 | No hit | No description |
SMART | SM00380 | 2.4E-31 | 13 | 77 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.9E-12 | 14 | 25 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.9E-12 | 37 | 53 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 129 aa Download sequence Send to blast |
MEEARRKNSE EVKYRGVRKR PWGKYGVEIR DSNRNGVRVW LGTYDTAEEA ARAYDRAAYG 60 MRGKFAVLNF PGEYPTTLNG SCSPATTMPP FGGSSLPPGM GFVERETAAK EVIEFECLDD 120 KLLEELLAG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 5e-30 | 9 | 74 | 10 | 75 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019165192.1 | 2e-53 | PREDICTED: ethylene-responsive transcription factor ERF095-like | ||||
Swissprot | Q9LTC5 | 3e-35 | ERF98_ARATH; Ethylene-responsive transcription factor ERF098 | ||||
TrEMBL | A0A059D1V2 | 1e-41 | A0A059D1V2_EUCGR; Uncharacterized protein | ||||
STRING | XP_010039174.1 | 2e-42 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23220.1 | 5e-23 | ERF family protein |
Publications ? help Back to Top | |||
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