PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000088.1_g00023.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ERF
Protein Properties Length: 123aa    MW: 13517.1 Da    PI: 5.0275
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000088.1_g00023.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.78e-201363255
                      AP2  2 gykGVrwdkkrgrWvAeIrdpse.ngkrkrfslgkfgtaeeAakaaiaarkkleg 55
                             +++GVr ++ +g++ AeIrd  + ng  +r++lg+f+taeeAa+a+++a+ +++g
  Itr_sc000088.1_g00023.1 13 KFRGVRKRP-WGKYGAEIRDS-NrNG--ARVWLGTFDTAEEAARAYDRAAYAMRG 63
                             89*******.**********4.4254..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008477.4E-141363IPR001471AP2/ERF domain
SMARTSM003801.7E-351377IPR001471AP2/ERF domain
SuperFamilySSF541711.63E-231372IPR016177DNA-binding domain
PROSITE profilePS5103223.2351371IPR001471AP2/ERF domain
CDDcd000187.15E-191371No hitNo description
Gene3DG3DSA:3.30.730.109.2E-311372IPR001471AP2/ERF domain
PRINTSPR003671.1E-111425IPR001471AP2/ERF domain
PRINTSPR003671.1E-113753IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 123 aa     Download sequence    Send to blast
MEEDRGGKTE EVKFRGVRKR PWGKYGAEIR DSNRNGARVW LGTFDTAEEA ARAYDRAAYA  60
MRGKFAVLNF PGEYPPSSLR AEASPSTSSA AVAGNADKQT AKEVIEIECL DDKLLEELLA  120
GCQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-3341142114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019162239.13e-48PREDICTED: ethylene-responsive transcription factor ERF098-like
SwissprotQ9LTC53e-40ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A2G9I9T01e-42A0A2G9I9T0_9LAMI; Uncharacterized protein
STRINGXP_010039174.19e-42(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23220.17e-25ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]