PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc000088.1_g00016.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | LBD | ||||||||
Protein Properties | Length: 236aa MW: 26031.9 Da PI: 6.6337 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 122.9 | 1.7e-38 | 9 | 109 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 +C aCk+lrrkC+k+Cv+apyf++eq +++fa++hk+FGasn +kll++lp +r +a+ ++ yeA+ar++dP+yG+v++i++lqq Itr_sc000088.1_g00016.1 9 PCGACKFLRRKCVKGCVFAPYFCHEQgASHFAAIHKVFGASNASKLLSHLPVGDRAEAAITISYEAQARLQDPIYGCVSHIFALQQ 94 7*************************89********************************************************** PP DUF260 86 qleqlkaelallkee 100 q+ +l+a+la+lke+ Itr_sc000088.1_g00016.1 95 QVINLRAQLASLKEQ 109 **********99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 21.799 | 8 | 110 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.7E-36 | 9 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010311 | Biological Process | lateral root formation | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 236 aa Download sequence Send to blast |
MSGSTSGSPC GACKFLRRKC VKGCVFAPYF CHEQGASHFA AIHKVFGASN ASKLLSHLPV 60 GDRAEAAITI SYEAQARLQD PIYGCVSHIF ALQQQVINLR AQLASLKEQA AQTFCNSSAN 120 PNHDRSWGRQ ACYSQENVQG WFGSGTLESV PQFPSNNVGE MGFYSNGNLN HHHLNPICNQ 180 TSILPEENMS YATSFEEGSS SMDSLDIQTD NKPWPPAYHD DRDDLQSVAF RYLQHH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-33 | 6 | 103 | 8 | 104 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-33 | 6 | 103 | 8 | 104 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as positive regulator of adventitious (crown) root formation by promoting its initiation (PubMed:15829602, PubMed:15960615). Acts as positive regulator of lateral root formation. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1 (PubMed:15829602). Involved in auxin-mediated cell dedifferentiation, and may promote the initial cell division in the pericycle cells adjacent to the peripheral vascular cylinder at the base of the stem (PubMed:15960615). May act upstream of the gene regulatory network controlling adventitious root (crown) development (PubMed:21806801). {ECO:0000269|PubMed:15829602, ECO:0000269|PubMed:15960615, ECO:0000269|PubMed:21806801}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by auxin (PubMed:15829602, PubMed:15960615). Induced by ethylene (PubMed:15960615). {ECO:0000269|PubMed:15829602, ECO:0000269|PubMed:15960615}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019165055.1 | 1e-150 | PREDICTED: LOB domain-containing protein 29-like | ||||
Swissprot | Q5UG13 | 3e-65 | LBD_ORYSJ; LOB domain-containing protein CRL1 | ||||
TrEMBL | A0A438F0I7 | 7e-93 | A0A438F0I7_VITVI; LOB domain-containing protein 29 | ||||
TrEMBL | A5AIW9 | 7e-93 | A5AIW9_VITVI; Uncharacterized protein | ||||
STRING | VIT_07s0005g03020.t01 | 4e-93 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA8446 | 22 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G58190.1 | 3e-68 | lateral organ boundaries-domain 29 |
Publications ? help Back to Top | |||
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