PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000087.1_g00007.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family NAC
Protein Properties Length: 399aa    MW: 45118.5 Da    PI: 7.0434
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000087.1_g00007.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM166.41e-51181581128
                      NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyW 83 
                              +ppGfrFhPtdeel+ +yL+kkv  + ++l +vi+evd++k+ePwdL++  ++ +  ++ewyfFs++dkky+tg+r+nrat++g+W
  Itr_sc000087.1_g00007.1  18 VPPGFRFHPTDEELLYYYLRKKVCYEAIDL-DVIREVDLNKLEPWDLKEkcRIGTgPQNEWYFFSHKDKKYPTGSRTNRATAAGFW 102
                              69****************************.9***************952444443456*************************** PP

                      NAM  84 katgkdkevlsk...........kgelvglkktLvfykgrapkgektdWvmheyrl 128
                              katg+dk+++++           +++ +g++ktLvfy+grap+g+ktdW+mheyrl
  Itr_sc000087.1_g00007.1 103 KATGRDKPIYHHhiptinssmsmSSRRIGMRKTLVFYTGRAPHGQKTDWIMHEYRL 158
                              ***********9888887777776667***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.15E-5814184IPR003441NAC domain
PROSITE profilePS5100556.18218184IPR003441NAC domain
PfamPF023654.1E-2719158IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003002Biological Processregionalization
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009834Biological Processplant-type secondary cell wall biogenesis
GO:0010455Biological Processpositive regulation of cell fate commitment
GO:0048829Biological Processroot cap development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MMMMQGGAGN SESGQVCVPP GFRFHPTDEE LLYYYLRKKV CYEAIDLDVI REVDLNKLEP  60
WDLKEKCRIG TGPQNEWYFF SHKDKKYPTG SRTNRATAAG FWKATGRDKP IYHHHIPTIN  120
SSMSMSSRRI GMRKTLVFYT GRAPHGQKTD WIMHEYRLII DNTNLHAHSL LEEDGWVVCR  180
VFRKKNHSRC SLQPEIIMSP GLQQQDDDDE CLAAVQMNMK KKASCPSSGE LPQQQHSRLP  240
EEEEEAANNN NNSFGWYQQL WDNIGCNYMH LPQLLSSEST SHHHTSPFLA PAAAPFTNME  300
TSVPHGALQT FLRPHHHHNN KLNNPGGGGG GDWAFLGKLL ASNHRTNDDI GDQTTYCNLL  360
LSQAAAADNM INIHHLSSTS TSTQQCFPFQ HNAAASFDP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A4e-491318710171Stress-induced transcription factor NAC1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00250DAPTransfer from AT1G79580Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU1718082e-63GU171808.1 Ipomoea batatas microsatellite Stv_Ipb_955 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019195861.10.0PREDICTED: protein SOMBRERO-like
TrEMBLA0A2P5BR161e-111A0A2P5BR16_PARAD; NAC domain containing protein
STRINGEMJ146431e-109(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13424297
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79580.33e-90NAC family protein