PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000086.1_g00028.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family bZIP
Protein Properties Length: 353aa    MW: 39563.6 Da    PI: 6.5249
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000086.1_g00028.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1301.1e-094084246
                             XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                   bZIP_1  2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLk 46
                             ++ k  rr+++NReAAr+sR+RKka++++Le+   +L++  ++L+
  Itr_sc000086.1_g00028.1 40 RDQKTLRRLAQNREAARKSRLRKKAYVQQLENSRMKLTQLEQELQ 84
                             567899*************************99888888776654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.6E-83686No hitNo description
SMARTSM003381.3E-639102IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.4844185IPR004827Basic-leucine zipper domain
PfamPF001701.0E-64284IPR004827Basic-leucine zipper domain
CDDcd147082.57E-214395No hitNo description
SuperFamilySSF579594.5E-74386No hitNo description
PROSITE patternPS0003604661IPR004827Basic-leucine zipper domain
PfamPF141445.4E-32126200IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009410Biological Processresponse to xenobiotic stimulus
GO:0009627Biological Processsystemic acquired resistance
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MADVSPRTDT STDADTEDKN MGFQNNHAVG IVGSDGSDRR DQKTLRRLAQ NREAARKSRL  60
RKKAYVQQLE NSRMKLTQLE QELQRARQQG IFISSSGDQS QSMSGNGALA FDVEYARWLE  120
EHNRRINELR GAVNSHAGDA ELRIIVDSIM AHYDDIFRIK GEAAKADVFH ILSGMWKTPA  180
ERCFLWLGGF RSSELLKLLI NQLEPLTEQQ LLAINNLQQS SQQAEDALSQ GMEALQQSLA  240
ETLAGSLGPS GSSGNVANYM GQMAMAMGKL GTLEGFIRQA DNLRQQTLQQ MHRILTTRQA  300
ARAFLGISDY FSRLRALSSL WLARPREDDI EDVLHQSLSA EIAWLHVVDL FML
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00349DAPTransfer from AT3G12250Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019155576.10.0PREDICTED: transcription factor TGA2.3-like
RefseqXP_019155577.10.0PREDICTED: transcription factor TGA2.3-like
RefseqXP_019155578.10.0PREDICTED: transcription factor TGA2.3-like
SwissprotQ415580.0HBP1C_WHEAT; Transcription factor HBP-1b(c1) (Fragment)
TrEMBLA0A068UNV80.0A0A068UNV8_COFCA; Uncharacterized protein
STRINGMigut.F00128.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8202385
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12250.21e-144TGACG motif-binding factor 6