PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000086.1_g00020.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family C2H2
Protein Properties Length: 290aa    MW: 32632.1 Da    PI: 4.4407
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000086.1_g00020.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2157.3e-056991223
                             EETTTTEEESSHHHHHHHHHH.T CS
                  zf-C2H2  2 kCpdCgksFsrksnLkrHirt.H 23
                             kCp+C+k+++ +  L rH+ + +
  Itr_sc000086.1_g00020.1 69 KCPNCKKRYKLRKWLDRHMINsC 91
                             8******************8766 PP
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MHASKEMWTK NGSGGGDEEE EEEEEKRRRE LSTLLLCGLG PQPFQVGPET TDEEDDDDDR  60
KEPRPRVLKC PNCKKRYKLR KWLDRHMINS CKKRPDEDAQ FKNRADDEGA QCKNRADDEG  120
AQNRADEEAR FKARADDEDA QFKNRADDEG AHCKAQADED ARCKARADEE ACFTARADED  180
AHCKNRADDE DAHCKNQADE DGRYKARADE EARFEARVDE DARCKNRADD EDAHCKKVPV  240
AFDLNEPPPE ESGQEIQGGG APPEVAPGAA EGDEHIQQPG LFSSNQDRAG