PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc000084.1_g00032.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | ERF | ||||||||
Protein Properties | Length: 423aa MW: 45039.6 Da PI: 8.4053 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 64.7 | 1.9e-20 | 210 | 259 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+W+AeIrdp + +r++lg+f+tae Aa+a+++a+++++g Itr_sc000084.1_g00032.1 210 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFDTAEAAARAYDEAALRFRG 259 7********.**********7.....337*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 3.7E-14 | 210 | 259 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.37E-22 | 210 | 268 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 8.6E-33 | 210 | 268 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 8.5E-37 | 210 | 273 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 25.712 | 210 | 267 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-11 | 211 | 222 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.17E-14 | 218 | 269 | No hit | No description |
PRINTS | PR00367 | 1.2E-11 | 233 | 249 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 423 aa Download sequence Send to blast |
MCLSIKVANR RDSGEYARFP ATGSGEESAS ASASASEGAS ESFDEMIRRE IQQEADYLLS 60 AAAQAPPPMF SGYGQSGEMT AVVTALTQVM SSQRSGGEQW RFGGAAAAPS LAAGGYSVNS 120 PSSTYSSTSS SSGAGQKRRR EQEESVSQIP EHVQRVYGGF GEFRTPAETT SSSVKSEEGG 180 GIVRPPAETA AATVAAGTSE DQETGERRRR YRGVRQRPWG KWAAEIRDPH KAARVWLGTF 240 DTAEAAARAY DEAALRFRGN RAKLNFPENV RLMPPPPQPR PQAAATRLHA PAIAPPRPPL 300 MFQAPPHAAV HGGAGGISGD YWEYSQLLQN PGELLSQPPR SLLEQMYFAS SMAVLHSHSM 360 PNSSSAASAS PSSSSSFPLL FSAAQPSTES TFFRPPSTQS PATSSNFRPP FWTSSAHYPP 420 SSS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-22 | 209 | 270 | 4 | 66 | ATERF1 |
3gcc_A | 2e-22 | 209 | 270 | 4 | 66 | ATERF1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 205 | 210 | ERRRRY |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015035 | 1e-36 | AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019153420.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ABR1-like | ||||
TrEMBL | A0A1S4B2I5 | 1e-101 | A0A1S4B2I5_TOBAC; ethylene-responsive transcription factor ABR1-like isoform X1 | ||||
STRING | XP_009777816.1 | 1e-100 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4322 | 21 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50080.1 | 3e-16 | ethylene response factor 110 |