PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000084.1_g00022.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

Trihelix

Protein Properties

Length: 532aa MW: 58729.1 Da PI: 6.967

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000084.1_g00022.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	92.6	4.1e-29	47	131	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW++qe+ aL+++r+em+ +r+++ k+plWeevs+km+e g++rs+k+Ckek+en+ k++k++k+g+ +++++s +++fdqle Itr_sc000084.1_g00022.1 47 RWPRQETIALLKIRTEMDAGFRDSSHKAPLWEEVSRKMAELGYRRSSKKCKEKFENVYKYHKRTKDGRAFKSDGKS--YRFFDQLE 130 8******************************************************************9766665..*****8 PP trihelix 87 a 87 a Itr_sc000084.1_g00022.1 131 A 131 5 PP
2	trihelix	103.7	1.4e-32	362	447	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW+k e+ aLi++r++m+++++++ k+plWeev++ m++ g +r++k+Ckekwen+nk++kk+ke++kkr +e+s+tcpyf+qle Itr_sc000084.1_g00022.1 362 RWPKPEIEALIRIRTSMDTKYQENGPKGPLWEEVAAEMQKLGHRRNAKRCKEKWENINKYFKKVKESNKKR-PEDSKTCPYFHQLE 446 8*******************************************************************8.99*********8 PP trihelix 87 a 87 a Itr_sc000084.1_g00022.1 447 A 447 5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	7.073	40	104	IPR017877	Myb-like domain
SMART	SM00717	0.006	44	106	IPR001005	SANT/Myb domain
Pfam	PF13837	1.0E-18	46	131	No hit	No description
CDD	cd12203	2.17E-25	46	111	No hit	No description
PROSITE profile	PS50090	7.48	355	419	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	4.5E-4	356	418	IPR009057	Homeodomain-like
SMART	SM00717	0.011	359	421	IPR001005	SANT/Myb domain
Pfam	PF13837	7.3E-22	361	448	No hit	No description
CDD	cd12203	2.62E-26	361	426	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 532 aa Download sequence Send to blast
MLDFSGGIVR DGAAEAPESG GEAHFGGEDA AARAEEGGGE RNSGGNRWPR QETIALLKIR 60 TEMDAGFRDS SHKAPLWEEV SRKMAELGYR RSSKKCKEKF ENVYKYHKRT KDGRAFKSDG 120 KSYRFFDQLE AFGNHSTPAA AAAAVVSAPV PAGGGQVTVS SIPEPFSAPI PANSPPFPPP 180 SQPLLGAAAE KGAGNVFPVG RNNNNSSASL LWCQTSSSST SSDEDIQRRH GRKRRRKDFF 240 ERLMRDVIEK QENMQKKFLE TIEKREIERT AREEAWRAQE TARINRDHDL LIQERSMAAA 300 KDAAVIKLLQ TIAEKNNIQI PTAARGGDFQ PPPPSTTVSP PKTAVAPPPT DNNNNSPVHN 360 SRWPKPEIEA LIRIRTSMDT KYQENGPKGP LWEEVAAEMQ KLGHRRNAKR CKEKWENINK 420 YFKKVKESNK KRPEDSKTCP YFHQLEALYK EKSKIEASMH PLEAENSPIM ARPEQQWPPA 480 APGHNADHND DNEEEEEDNS DDDDNEAGGG YEVLPTPGSG AGAGGAATGT AE

Sequence ? help Back to Top

Protein Sequence Length: 532 aa Download sequence Send to blast

MLDFSGGIVR DGAAEAPESG GEAHFGGEDA AARAEEGGGE RNSGGNRWPR QETIALLKIR  60
TEMDAGFRDS SHKAPLWEEV SRKMAELGYR RSSKKCKEKF ENVYKYHKRT KDGRAFKSDG  120
KSYRFFDQLE AFGNHSTPAA AAAAVVSAPV PAGGGQVTVS SIPEPFSAPI PANSPPFPPP  180
SQPLLGAAAE KGAGNVFPVG RNNNNSSASL LWCQTSSSST SSDEDIQRRH GRKRRRKDFF  240
ERLMRDVIEK QENMQKKFLE TIEKREIERT AREEAWRAQE TARINRDHDL LIQERSMAAA  300
KDAAVIKLLQ TIAEKNNIQI PTAARGGDFQ PPPPSTTVSP PKTAVAPPPT DNNNNSPVHN  360
SRWPKPEIEA LIRIRTSMDT KYQENGPKGP LWEEVAAEMQ KLGHRRNAKR CKEKWENINK  420
YFKKVKESNK KRPEDSKTCP YFHQLEALYK EKSKIEASMH PLEAENSPIM ARPEQQWPPA  480
APGHNADHND DNEEEEEDNS DDDDNEAGGG YEVLPTPGSG AGAGGAATGT AE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	231	235	RKRRR
2	231	237	RKRRRKD

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds specific DNA sequence. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019152906.1	0.0	PREDICTED: trihelix transcription factor GT-2-like
Swissprot	Q39117	1e-137	TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBL	A0A3Q7JB43	1e-170	A0A3Q7JB43_SOLLC; Uncharacterized protein
STRING	Solyc12g056510.1.1	1e-170	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2402	24	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76880.1	6e-83	Trihelix family protein