PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000083.1_g00046.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

TALE

Protein Properties

Length: 685aa MW: 75252.4 Da PI: 5.1379

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000083.1_g00046.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	27.2	6.7e-09	430	467	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ ++++ LA+++gLt qV++WF N R + Itr_sc000083.1_g00046.1 430 FEHflHPYPKDSDKAMLARQTGLTRGQVSNWFINARVR 467 664459******************************88 PP
2	BELL	119.4	1.7e-38	293	363	2	72
BELL 2 rqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 +qelq+k +kL s+++e+d+rY+qy++q+++v+ssF++vag g+akpYt+lAl +iSrhFrcL+dai++qi Itr_sc000083.1_g00046.1 293 KQELQNKLTKLFSMQDEIDRRYRQYYHQMHMVVSSFDVVAGEGAAKPYTALALLTISRHFRCLRDAISGQI 363 79********************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	2.0E-54	217	361	IPR006563	POX domain
Pfam	PF07526	3.9E-47	225	360	IPR006563	POX domain
PROSITE profile	PS50071	11.839	408	471	IPR001356	Homeobox domain
CDD	cd00086	2.65E-12	411	472	No hit	No description
SMART	SM00389	6.7E-9	411	475	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.84E-16	412	477	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.0E-27	414	476	IPR009057	Homeodomain-like
Pfam	PF05920	1.5E-17	428	467	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 685 aa Download sequence Send to blast
MATYFSSSNN QKDASTFLYS RESLPGSYSE APAVPGNIMM FMNYSSSSGL CSETIAESSQ 60 EQSRGCTDIP PIGSSVSNPS PQQGISNIRG SQIGAHDLSM WKDNRNEMLM MHHPMGGALD 120 VLQTAHSMQG QGLSLSLGTQ MPPGIQVASS QCQNPSQGFT SFLSPPSIPG EGNGGNRSFG 180 DIDDSHAKQS RAMEYLLPGF PSSYDAMKMD GSPYGMPSIG RAFPDSKFLK AAQQLLDEVV 240 NVKKAVKERG STKVEANGTN EVDADSNCKS SDPPVTGSSS NPQEPNELSA NDKQELQNKL 300 TKLFSMQDEI DRRYRQYYHQ MHMVVSSFDV VAGEGAAKPY TALALLTISR HFRCLRDAIS 360 GQIRVLQKSL GDQDVADNNK GVGISRLRYV DQQLRQQRAL QQLGMMQPHA WRPQRGLPES 420 SVSILRAWLF EHFLHPYPKD SDKAMLARQT GLTRGQVSNW FINARVRLWK PMVEEIYKEE 480 FADAEFESNS SSEIAPKATE SDTKAFDEQE KGFQPPATSP EDEPCISGKL FQPKSNHAPN 540 VEMVESNIGI TFRDGDHVET DSQYETGDRG GAAIAKPTTG DSSLLQDTVL QSSGAHNRFM 600 YPASAYHMPE LERFGNGNGN GNGVSLTLGL QQCEGSHNFL STREDDVYIP SASSVEPEQA 660 DFNYIDPENR QHQFGSSHLF HDFVA

Sequence ? help Back to Top

Protein Sequence Length: 685 aa Download sequence Send to blast

MATYFSSSNN QKDASTFLYS RESLPGSYSE APAVPGNIMM FMNYSSSSGL CSETIAESSQ  60
EQSRGCTDIP PIGSSVSNPS PQQGISNIRG SQIGAHDLSM WKDNRNEMLM MHHPMGGALD  120
VLQTAHSMQG QGLSLSLGTQ MPPGIQVASS QCQNPSQGFT SFLSPPSIPG EGNGGNRSFG  180
DIDDSHAKQS RAMEYLLPGF PSSYDAMKMD GSPYGMPSIG RAFPDSKFLK AAQQLLDEVV  240
NVKKAVKERG STKVEANGTN EVDADSNCKS SDPPVTGSSS NPQEPNELSA NDKQELQNKL  300
TKLFSMQDEI DRRYRQYYHQ MHMVVSSFDV VAGEGAAKPY TALALLTISR HFRCLRDAIS  360
GQIRVLQKSL GDQDVADNNK GVGISRLRYV DQQLRQQRAL QQLGMMQPHA WRPQRGLPES  420
SVSILRAWLF EHFLHPYPKD SDKAMLARQT GLTRGQVSNW FINARVRLWK PMVEEIYKEE  480
FADAEFESNS SSEIAPKATE SDTKAFDEQE KGFQPPATSP EDEPCISGKL FQPKSNHAPN  540
VEMVESNIGI TFRDGDHVET DSQYETGDRG GAAIAKPTTG DSSLLQDTVL QSSGAHNRFM  600
YPASAYHMPE LERFGNGNGN GNGVSLTLGL QQCEGSHNFL STREDDVYIP SASSVEPEQA  660
DFNYIDPENR QHQFGSSHLF HDFVA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3k2a_A	3e-16	417	475	5	63	Homeobox protein Meis2
3k2a_B	3e-16	417	475	5	63	Homeobox protein Meis2
4xrs_A	2e-16	417	474	1	58	Homeobox protein Meis1
4xrs_B	2e-16	417	474	1	58	Homeobox protein Meis1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019165539.1	0.0	PREDICTED: BEL1-like homeodomain protein 6
Swissprot	O65685	1e-130	BLH6_ARATH; BEL1-like homeodomain protein 6
TrEMBL	A0A1R3HVP7	0.0	A0A1R3HVP7_COCAP; Uncharacterized protein
STRING	EOX97922	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA10205	22	26

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G34610.2	1e-134	BEL1-like homeodomain 6

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Cassan-Wang H, et al. Identification of novel transcription factors regulating secondary cell wall formation in Arabidopsis. Front Plant Sci, 2013. 4: p. 189 [PMID:23781226]