PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000079.1_g00098.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ERF
Protein Properties Length: 282aa    MW: 31200.5 Da    PI: 5.1148
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000079.1_g00098.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.11.2e-19116166155
                      AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                              ++++GVr+++ +grW+AeIrdp+    r kr +lg+++++eeAa  +++a+ +l+g
  Itr_sc000079.1_g00098.1 116 KKFRGVRQRP-WGRWAAEIRDPT----RgKRLWLGTYDSPEEAATVYDKAAVRLKG 166
                              59********.**********84....35************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381232.1E-5111271IPR017392AP2/ERF transcription factor ERF/PTI6
CDDcd000181.77E-31116174No hitNo description
PfamPF008472.8E-12117166IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-29117175IPR001471AP2/ERF domain
SMARTSM003804.3E-36117180IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-21117175IPR016177DNA-binding domain
PROSITE profilePS5103223.986117174IPR001471AP2/ERF domain
PRINTSPR003676.7E-9118129IPR001471AP2/ERF domain
PRINTSPR003676.7E-9140156IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MVFEKATDLG SPATVRFSEH VIMTNKHVPE GSFGSGAPGR VRNRVVRIVV TDGDATDSSD  60
DEGERGVGRR RVKRHVSEIK LVPAPAEQRV QFTSSGSKKR GLSDVTSSES DASTRKKFRG  120
VRQRPWGRWA AEIRDPTRGK RLWLGTYDSP EEAATVYDKA AVRLKGADAV TNFPKLTVTE  180
TAVDASNNAA ALSPASVLRY DDSTPFDSPV QSDVTPNGDE FTALNNLDDF GNFDSPIDFD  240
FFGLPSFRLL ANHRAEEFDE FDVDYFLLEN QLEHPRSLMA EL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-19116174463ATERF1
3gcc_A2e-19116174463ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Activates the defense genes of plants. {ECO:0000269|PubMed:11971137}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019178216.11e-165PREDICTED: pathogenesis-related genes transcriptional activator PTI6-like
SwissprotO046824e-58PTI6_SOLLC; Pathogenesis-related genes transcriptional activator PTI6
TrEMBLA0A484NI805e-83A0A484NI80_9ASTE; Uncharacterized protein
STRINGXP_009607079.11e-73(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52272137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.14e-33cytokinin response factor 4