PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc000079.1_g00088.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | LBD | ||||||||
Protein Properties | Length: 160aa MW: 17779.6 Da PI: 7.2431 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 122.9 | 1.7e-38 | 12 | 108 | 1 | 97 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 +CaaCk+lrr+C+k C++ pyfp ++p++fa+vh++FGasn++k+l+++p + r da+ s+vyeA ar+rdP+yG+vg+i+ lq++ Itr_sc000079.1_g00088.1 12 PCAACKLLRRRCTKYCIFLPYFPPTHPERFAAVHQIFGASNITKMLQEVPVDSRADAVMSMVYEATARLRDPIYGCVGLISVLQKN 97 7************************************************************************************* PP DUF260 87 leqlkaelall 97 + +l+++l++ Itr_sc000079.1_g00088.1 98 VFELQSKLNES 108 *****999875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 23.943 | 11 | 112 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.7E-39 | 12 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 160 aa Download sequence Send to blast |
MMSSSSNKNS MPCAACKLLR RRCTKYCIFL PYFPPTHPER FAAVHQIFGA SNITKMLQEV 60 PVDSRADAVM SMVYEATARL RDPIYGCVGL ISVLQKNVFE LQSKLNESVA ETMALKTQLS 120 SVLSASLLYD PALPDTMLLT SDLSNSSQPT EFFNPEPYIV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 4e-42 | 10 | 113 | 9 | 112 | LOB family transfactor Ramosa2.1 |
5ly0_B | 4e-42 | 10 | 113 | 9 | 112 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019178781.1 | 1e-103 | PREDICTED: LOB domain-containing protein 12-like isoform X1 | ||||
Swissprot | Q8LBW3 | 1e-46 | LBD12_ARATH; LOB domain-containing protein 12 | ||||
TrEMBL | A0A314LGR4 | 2e-59 | A0A314LGR4_NICAT; Lob domain-containing protein 4 | ||||
STRING | Solyc06g082770.2.1 | 1e-59 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA43 | 24 | 669 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G30130.1 | 3e-48 | LBD family protein |
Publications ? help Back to Top | |||
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