PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000079.1_g00082.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MYB_related

Protein Properties

Length: 274aa MW: 29798.3 Da PI: 5.4056

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000079.1_g00082.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	22.3	3e-07	57	101	3	44
SS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrw 44 WT+eE+ +l ++ + +G++ + ++Ia ++ +t ++ +r Itr_sc000079.1_g00082.1 57 EWTPEEQSILEELLATYGKEnnivRYAKIAMQLN-DKTVRDVALRC 101 7*********************************.99999998885 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	4.41E-7	51	111	IPR009057	Homeodomain-like
SMART	SM00717	2.9E-6	54	107	IPR001005	SANT/Myb domain
CDD	cd00167	1.56E-7	57	102	No hit	No description
Gene3D	G3DSA:1.10.10.60	5.0E-6	57	112	IPR009057	Homeodomain-like
Pfam	PF00249	2.1E-6	57	102	IPR001005	SANT/Myb domain
Pfam	PF12579	2.4E-16	214	247	IPR022228	Protein of unknown function DUF3755

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 274 aa Download sequence Send to blast
MAASADTAAG NGNGNSNGQE GTGNANGATS NGVSVPENSV LGATQAALRH NPGISVEWTP 60 EEQSILEELL ATYGKENNIV RYAKIAMQLN DKTVRDVALR CRWMTKKENS KRRKEDHSRK 120 NKDKKEKITE SMPKSSHVAN RTNGPFYAQS TTPMDNDDGI SYKDGCLQFQ INTVSSSLIC 180 DEAVSDQDAI GGPAGQLLEQ TAQALDQIST NFAAFKIHEN IGLFFQARNN IVSILNDMND 240 MPEIMKQMPP LPVKLNDELA STLLPQPPPL PKQA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	118	125	RKNKDKKE

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019178435.1	1e-159	PREDICTED: uncharacterized protein LOC109173637
TrEMBL	A0A1S3Y4B7	1e-132	A0A1S3Y4B7_TOBAC; uncharacterized protein LOC107772021
STRING	XP_009605855.1	1e-132	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2930	2	2