PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc000079.1_g00071.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | FAR1 | ||||||||
Protein Properties | Length: 221aa MW: 25687.2 Da PI: 8.359 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 87.5 | 2e-27 | 56 | 144 | 1 | 89 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHn 86 +fY++YA+++GF +r+++ ++s+ +++i +r++ C+k+g+ + k++ +r++r++tr gCka++ vk +k+gkw+vt++++eH+ Itr_sc000079.1_g00071.1 56 EFYDNYARRAGFVMRIDQCRRSEVDKRILSRRLSCNKQGYYVKMKDQFGPARKPRTSTREGCKAMMLVKVDKSGKWVVTRFVKEHT 141 6*****************************************999999************************************** PP FAR1 87 Hel 89 H+l Itr_sc000079.1_g00071.1 142 HPL 144 *99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 3.6E-25 | 56 | 145 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 221 aa Download sequence Send to blast |
MIKECEIHQC YVDIEVEAAI GDSSASAERR LDSGEESRVQ EPVVGMEFES EDAAKEFYDN 60 YARRAGFVMR IDQCRRSEVD KRILSRRLSC NKQGYYVKMK DQFGPARKPR TSTREGCKAM 120 MLVKVDKSGK WVVTRFVKEH THPLIVSGRP SRNAMDHKDR RIHELTMELD RQDRLCELYR 180 DQLNTLLKYI EEQIEVVSGK VQVVVSNVNQ VEKEARKPTN Q |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019178403.1 | 1e-152 | PREDICTED: protein FAR1-RELATED SEQUENCE 7-like isoform X1 | ||||
Refseq | XP_019178404.1 | 1e-152 | PREDICTED: protein FAR1-RELATED SEQUENCE 7-like isoform X1 | ||||
TrEMBL | A0A1S3YTJ7 | 1e-101 | A0A1S3YTJ7_TOBAC; protein FAR1-RELATED SEQUENCE 5-like | ||||
STRING | XP_009779434.1 | 1e-101 | (Nicotiana sylvestris) | ||||
STRING | XP_009626414.1 | 1e-101 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA11602 | 20 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43280.1 | 3e-67 | FAR1 family protein |