PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000074.1_g00036.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family C2H2
Protein Properties Length: 338aa    MW: 38331.2 Da    PI: 6.5979
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000074.1_g00036.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.50.00043240261122
                              EEETTTTEEESSHHHHHHHHHH CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirt 22 
                              y C+ C+k+F r s+++ H   
  Itr_sc000074.1_g00036.1 240 YGCQFCPKVFDRLSSYTGHVGI 261
                              67***************99755 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS509829.51179152IPR001739Methyl-CpG DNA binding
SuperFamilySSF541719.48E-888134IPR016177DNA-binding domain
PfamPF014291.4E-488135IPR001739Methyl-CpG DNA binding
Gene3DG3DSA:3.30.890.109.5E-889134IPR001739Methyl-CpG DNA binding
SuperFamilySSF576672.22E-7192262No hitNo description
PROSITE profilePS5015710.429193220IPR007087Zinc finger, C2H2
SMARTSM003550.44193215IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280195215IPR007087Zinc finger, C2H2
PROSITE profilePS501578.829240267IPR007087Zinc finger, C2H2
SMARTSM003550.31240262IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280242262IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MISDLDNYYF QQNQHQAEVE LKMVTEDGVP IDFTALERGG DDAFTEELNR RTAGMETRDQ  60
LFGFIEGLGG EWLSRKRMCV DAGEFVDVLP AGWKVTVAIK PSHQGRSVPY FYRYISPSGE  120
QFPSCKEVAR FLQTQFLSRP TAQNVVVLPG EDDGDGVNCT AVVPDIAPEM HGEEILPEGT  180
DNQAGGVQIH DRYYCEFCKI GFNERTEFAR HNRFHRKTRS GGYRNRPPLT DGMIMKDGKY  240
GCQFCPKVFD RLSSYTGHVG IHLRRNLKGS STSIEVAPRA AKTYYGKDPR GARVRLRPRA  300
YSRVDNLRHL SEIVMRDEEE ELANLRLLSE VSERCICG