PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc000071.1_g00074.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | ERF | ||||||||
Protein Properties | Length: 253aa MW: 28137.8 Da PI: 6.3517 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 51.6 | 2.4e-16 | 121 | 171 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +++GVr+++ +g+++AeIrdp +g r++lg++ +e+Aa a+++a+ k++g Itr_sc000071.1_g00074.1 121 RFRGVRRRP-WGKFAAEIRDPERRG--FRIWLGTYEKPEDAALAYDRAAYKMRG 171 69*******.**********84444..9************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 23.327 | 121 | 179 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 8.3E-30 | 121 | 180 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.85E-22 | 121 | 180 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 3.8E-11 | 121 | 171 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.4E-33 | 121 | 185 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-12 | 122 | 133 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.39E-23 | 129 | 181 | No hit | No description |
PRINTS | PR00367 | 1.2E-12 | 161 | 181 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence Send to blast |
MNQENLSSSD LSLLESISQH LLNDSDFDDL SSYELTDSSD SHVLSSYELT DSTHSHDSSF 60 DFSDLLSRTN SSYELTDSTN SSHELTDSTS DHDSSSHPGN EVANEGRAVA RGSEAAGDWR 120 RFRGVRRRPW GKFAAEIRDP ERRGFRIWLG TYEKPEDAAL AYDRAAYKMR GSRAVLNFPH 180 LIGSPDAPEP VRVRPRRRLQ SSPAHAPPSS SVESQSPKRR RKIELINAVA KANLMNAISG 240 IQLGHSPLLT PNF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 9e-28 | 122 | 186 | 6 | 70 | ATERF1 |
3gcc_A | 9e-28 | 122 | 186 | 6 | 70 | ATERF1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019159009.1 | 1e-110 | PREDICTED: ethylene-responsive transcription factor 1-like | ||||
TrEMBL | A0A2G2XMS4 | 1e-53 | A0A2G2XMS4_CAPBA; Ethylene-responsive transcription factor 2 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44840.1 | 2e-28 | ethylene-responsive element binding factor 13 |