PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc000071.1_g00062.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | ERF | ||||||||
Protein Properties | Length: 220aa MW: 23601.1 Da PI: 7.2359 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57.5 | 3.4e-18 | 66 | 116 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+GVr + +g+Wv+eIr+p++ + r++lg++ t+e+Aa+a++ a+++++g+ Itr_sc000071.1_g00062.1 66 SYSGVRKRI-WGKWVSEIREPKK---KSRIWLGTYPTPEMAARAHDVAALAIKGH 116 79****887.**********854...6***********************99986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 4.3E-13 | 65 | 116 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.41E-31 | 65 | 125 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 1.9E-30 | 66 | 124 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.2E-35 | 66 | 129 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.54E-20 | 66 | 124 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 22.616 | 66 | 123 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.6E-9 | 67 | 78 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.6E-9 | 89 | 105 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 220 aa Download sequence Send to blast |
MEEEHAITTP PCSSSATSSS ANSDGSNSPA AATFPKKGMK RGKEGKGGDE KEKRRKNAGA 60 DSKYPSYSGV RKRIWGKWVS EIREPKKKSR IWLGTYPTPE MAARAHDVAA LAIKGHSASL 120 NFPHLAHHLP RPASTSPKDI QAAAARAAAT TFPSTDGGDN GGEPRAAENT QQHFPTTNVD 180 DDTVFDLPDL SLMDDEYGQI SPSPLAGNNA GFQLDEPFLW |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-16 | 59 | 124 | 7 | 73 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 34 | 40 | PKKGMKR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019158972.1 | 1e-125 | PREDICTED: ethylene-responsive transcription factor ERF039 | ||||
Swissprot | Q8LBQ7 | 2e-48 | ERF34_ARATH; Ethylene-responsive transcription factor ERF034 | ||||
TrEMBL | A0A2G9GT81 | 3e-59 | A0A2G9GT81_9LAMI; Uncharacterized protein | ||||
STRING | XP_009771308.1 | 2e-58 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA212 | 24 | 225 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44940.1 | 2e-44 | ERF family protein |
Publications ? help Back to Top | |||
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