PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000071.1_g00053.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

C2H2

Protein Properties

Length: 174aa MW: 19329.5 Da PI: 7.9629

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000071.1_g00053.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.6	0.0002	4	26	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C++ F + L H+r+H Itr_sc000071.1_g00053.1 4 HKCRICSRNFANGRALGGHMRSH 26 79********************9 PP
2	zf-C2H2	13.1	0.00029	87	109	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C k+F++ L H +H Itr_sc000071.1_g00053.1 87 YRCESCRKVFRSYQALGGHRASH 109 9***********99999998887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13912	3.4E-6	4	26	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	9.702	4	26	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.069	4	26	IPR015880	Zinc finger, C2H2-like
SuperFamily	SSF57667	4.52E-9	4	26	No hit	No description
PROSITE pattern	PS00028	0	6	26	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	4.52E-9	82	109	No hit	No description
Pfam	PF13912	2.3E-10	87	111	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.15	87	109	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	9.66	87	109	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	89	109	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	3.73E-6	133	165	No hit	No description
Pfam	PF13912	3.2E-10	137	159	IPR007087	Zinc finger, C2H2
SMART	SM00355	1.4	137	159	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	9.016	137	159	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	139	159	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 174 aa Download sequence Send to blast
MEEHKCRICS RNFANGRALG GHMRSHVWNP YMQSAGAGDS ETESSVSDNS PEEDGAYCLM 60 MLSRDKWNTD EKSSGEVKKT ANGKRKYRCE SCRKVFRSYQ ALGGHRASHK KIVVKGLCDD 120 EEENVGENNG DVEEKLHECP FCYRLFSSGQ ALGGHKRSHF TAASSACLLS PSTK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may be involved in stress responses. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019159012.1	2e-81	PREDICTED: zinc finger protein ZAT4-like
Swissprot	Q9M202	2e-32	ZAT9_ARATH; Zinc finger protein ZAT9
TrEMBL	A0A4D8ZTN0	1e-49	A0A4D8ZTN0_SALSN; Uncharacterized protein
STRING	PGSC0003DMT400066939	3e-43	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1095	24	80

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60580.1	2e-32	C2H2-like zinc finger protein