PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc000071.1_g00035.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | LBD | ||||||||
Protein Properties | Length: 223aa MW: 23095.2 Da PI: 8.2297 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 125 | 3.8e-39 | 27 | 127 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 +C aCk+lrrkC+++C++apyf ++q ++ fa vhk+FGasnv+kll+++p+++r da+ ++++eA+ar+rdPvyG+v++i+++qq Itr_sc000071.1_g00035.1 27 PCGACKFLRRKCVAGCIFAPYFDSDQgASVFASVHKVFGASNVSKLLHHIPPHKRLDAVITVCFEAQARLRDPVYGCVAHIFAIQQ 112 7***********************99889********************************************************* PP DUF260 86 qleqlkaelallkee 100 q+ +l+ael+ l+++ Itr_sc000071.1_g00035.1 113 QVVNLQAELSFLQAH 127 **********99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 23.055 | 26 | 128 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.7E-38 | 27 | 125 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010089 | Biological Process | xylem development | ||||
GO:0010199 | Biological Process | organ boundary specification between lateral organs and the meristem |
Sequence ? help Back to Top |
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Protein Sequence Length: 223 aa Download sequence Send to blast |
MSLNCSSTGS GGGGSGGGGG GGGGGGPCGA CKFLRRKCVA GCIFAPYFDS DQGASVFASV 60 HKVFGASNVS KLLHHIPPHK RLDAVITVCF EAQARLRDPV YGCVAHIFAI QQQVVNLQAE 120 LSFLQAHLAS LQVPTPPPPP PPPMSAAINI ADLSTVSPAA YDTLSSLFDP TSLTTVQAAW 180 APPVQQTRHF NRDPAESSSS PPAGSGVLQE LTRHLMRRPP QGC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-38 | 23 | 128 | 7 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-38 | 23 | 128 | 7 | 111 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the positive regulation of tracheary element (TE) differentiation. Involved in a positive feedback loop that maintains or promotes NAC030/VND7 expression that regulates TE differentiation-related genes. {ECO:0000269|PubMed:19088331}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019158984.1 | 4e-99 | PREDICTED: LOB domain-containing protein 30-like | ||||
Swissprot | O81323 | 7e-67 | LBD30_ARATH; LOB domain-containing protein 30 | ||||
TrEMBL | A0A484M5G7 | 3e-77 | A0A484M5G7_9ASTE; Uncharacterized protein | ||||
STRING | XP_009795320.1 | 1e-75 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA43 | 24 | 669 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00220.1 | 1e-67 | LBD family protein |
Publications ? help Back to Top | |||
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