PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000071.1_g00031.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family GRF
Protein Properties Length: 424aa    MW: 47258 Da    PI: 8.9897
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000071.1_g00031.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC75.36.3e-24113157145
                      WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                              d+epgrCrRtDGKkWRCs+ v++ +k+CErH+hrg++rsrk +e+
  Itr_sc000071.1_g00031.1 113 DPEPGRCRRTDGKKWRCSKSVVPHEKYCERHMHRGSNRSRKLVEA 157
                              79****************************************997 PP

2WRC54.12.7e-17311346237
                      WRC   2 aepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrs 37 
                              +ep+rC R+DGKkWRC+r  ++g+k+C  Hlhrg+ 
  Itr_sc000071.1_g00031.1 311 TEPLRCFRSDGKKWRCKRASVPGHKYCGMHLHRGSR 346
                              79*******************************954 PP

3QLQ40.49.3e-154579337
                      QLQ  3 FTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
                             FT aQ+++L  Q+ ++Ky+  ++PvP +L+++i++
  Itr_sc000071.1_g00031.1 45 FTEAQWNELYLQAVIFKYIQCGLPVPFHLVLPIWR 79
                             *********************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009512.6E-54379IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166617.394479IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088801.8E-104578IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166723.76113157IPR014977WRC domain
PfamPF088793.9E-20114156IPR014977WRC domain
PROSITE profilePS5166719.302310355IPR014977WRC domain
PfamPF088791.3E-14312347IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 424 aa     Download sequence    Send to blast
MHASIEKDGS PSLKLVLGYE GSGHVKIEQK DREEEEEEEE RKCGFTEAQW NELYLQAVIF  60
KYIQCGLPVP FHLVLPIWRT VSTSFDTTVF FRQQFSGFRD LNAWGFGDMS MMDPEPGRCR  120
RTDGKKWRCS KSVVPHEKYC ERHMHRGSNR SRKLVEASQT ESKSRINPAS KYDRPLNLEP  180
KPKFLSATKA SIGSPSNGVN GHIDSPFSTM EANRFCTNNG KHNSSSVHGV DPNLVRTIAP  240
SESHNIRGRS DNIDGKYAMF NPKETNQMSG KRNTSQSYVF VPGLGMFPRS GHEHGTGSSS  300
SGIPQNRLAE TEPLRCFRSD GKKWRCKRAS VPGHKYCGMH LHRGSRKITA PSNPVTVALP  360
PPSSTDRICP PLAIATRYID DGTSLNTNLS IAPASHQLVN CDSTHTSSSD STTITDETPT  420
FVMH
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019159209.10.0PREDICTED: growth-regulating factor 9-like isoform X4
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA77981922
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45480.14e-30growth-regulating factor 9