PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000069.1_g00078.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ERF
Protein Properties Length: 203aa    MW: 22050.5 Da    PI: 6.526
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000069.1_g00078.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.53e-172673152
                      AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkk 52
                             + y+GVr ++ +g+Wv+eIr p++   + r++lg++ tae+Aa+a++ a  +
  Itr_sc000069.1_g00078.1 26 PVYRGVRMRS-WGKWVSEIRQPRK---KSRIWLGTYPTAEMAARAHDVAVVA 73
                             68*****998.**********843...6*******************99765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008478.6E-122670IPR001471AP2/ERF domain
SMARTSM003802.4E-352790IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-212785IPR016177DNA-binding domain
PROSITE profilePS5103222.552784IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-302785IPR001471AP2/ERF domain
CDDcd000187.08E-292886No hitNo description
PRINTSPR003671.4E-102839IPR001471AP2/ERF domain
PRINTSPR003671.4E-105066IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MQGKNRKNKN RNKDKDKNKE SGNRHPVYRG VRMRSWGKWV SEIRQPRKKS RIWLGTYPTA  60
EMAARAHDVA VVAIKGDSTL LNFPHLLGSL PRAASASPGD VQAAAAQAAA MEELNPLSSS  120
AAAAAESATT SAASDDLGEI IQLPNLDEEG SFDSSEPKAA VDRWVYPPWW LPDDDLCGNF  180
LNEPAGGETV NPASFETLNW AAH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A9e-182285973Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019193752.11e-104PREDICTED: ethylene-responsive transcription factor ERF039-like
SwissprotQ9M0803e-47ERF43_ARATH; Ethylene-responsive transcription factor ERF043
TrEMBLA0A484M3P28e-67A0A484M3P2_9ASTE; Uncharacterized protein
STRINGSolyc06g066540.1.13e-66(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21224225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.11e-38ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]