PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000069.1_g00026.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 776aa MW: 89119.5 Da PI: 8.011

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000069.1_g00026.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	86.7	3.6e-27	28	114	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHn 86 +fY+eYAk+vGF + k +s++s+ ++e+++++f C ++g++++++++ ++r++ ++gCka+++vk++++gkw+++++++eHn Itr_sc000069.1_g00026.1 28 EFYKEYAKSVGFGTAKLSSRRSRASKEFIDAKFSCIRYGNKQQSDDA----INPRPSPKIGCKASMHVKRRQSGKWYIHSFVKEHN 109 6**************************************999877....9****************************** PP FAR1 87 Helap 91 Hel p Itr_sc000069.1_g00026.1 110 HELLP 114 975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	6.3E-25	28	114	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	7.2E-19	227	319	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.2	506	542	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	9.3E-8	512	540	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.4E-7	517	544	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 776 aa Download sequence Send to blast
MESSVVAGSS NLEPRDDMEF DSHEAAYEFY KEYAKSVGFG TAKLSSRRSR ASKEFIDAKF 60 SCIRYGNKQQ SDDAINPRPS PKIGCKASMH VKRRQSGKWY IHSFVKEHNH ELLPAQVHLF 120 RSHRNGDPLK NDPKVRRKKA LAAVSNHYGT YQFSSSLENV FRSQHDRGRN LSLEEGDAQV 180 LLEFFVHMQE ENPEFFYAID LNEEHRLRNV FWVDAKGMED YANFGDVVSL DISYFSNKHK 240 IPLVFFIGVN NHIHPTLMGC ALIVDESVHT FLWLLRTWCL AMGGRGPRVL LTDQNNAIKA 300 AVSAVLPNTH HYFNLWCILE KIPRYLDYLS LWHDPFIAKF RKCIHMSWTE EQFEKRWWKL 360 IDRFNLREDE WIQSLHEDRK RWVPTFIRDV SFAGLSTASR AESMNSLLDK YINGETSLRE 420 FIGKYKLILE DRYEEEAKAN FDAWHETAEL KSPSPFEKQL SLIYTHEIFK KFQVEVLGVA 480 ACHLRKEKDD TTMTYAVKDI ENDQEFMVEW TESKSEIFCS CHLFEYKGFL CRHAIVVLQM 540 SGVFRIPIKY ILQRWSNIAK SRLPISERLD EVQAKVRCYN DLCRRAIILG EEGSLSQESY 600 NIAVSAIKEA IRQCAAANGP TQTDLRPPGM PATLAIQGVE EANHKSTAVA REQVSNIKVT 660 QTSRGTKRVD SGNEKESNES CANKKGKVPL EPEVTNLGTQ GVFHQMPGLS NLLPKVSYNI 720 AEGWQKESAS KWGLRGEIVV NLALSAAKHV TIWTVLPFSA IVLQMRQPTN LTLHLH

Sequence ? help Back to Top

Protein Sequence Length: 776 aa Download sequence Send to blast

MESSVVAGSS NLEPRDDMEF DSHEAAYEFY KEYAKSVGFG TAKLSSRRSR ASKEFIDAKF  60
SCIRYGNKQQ SDDAINPRPS PKIGCKASMH VKRRQSGKWY IHSFVKEHNH ELLPAQVHLF  120
RSHRNGDPLK NDPKVRRKKA LAAVSNHYGT YQFSSSLENV FRSQHDRGRN LSLEEGDAQV  180
LLEFFVHMQE ENPEFFYAID LNEEHRLRNV FWVDAKGMED YANFGDVVSL DISYFSNKHK  240
IPLVFFIGVN NHIHPTLMGC ALIVDESVHT FLWLLRTWCL AMGGRGPRVL LTDQNNAIKA  300
AVSAVLPNTH HYFNLWCILE KIPRYLDYLS LWHDPFIAKF RKCIHMSWTE EQFEKRWWKL  360
IDRFNLREDE WIQSLHEDRK RWVPTFIRDV SFAGLSTASR AESMNSLLDK YINGETSLRE  420
FIGKYKLILE DRYEEEAKAN FDAWHETAEL KSPSPFEKQL SLIYTHEIFK KFQVEVLGVA  480
ACHLRKEKDD TTMTYAVKDI ENDQEFMVEW TESKSEIFCS CHLFEYKGFL CRHAIVVLQM  540
SGVFRIPIKY ILQRWSNIAK SRLPISERLD EVQAKVRCYN DLCRRAIILG EEGSLSQESY  600
NIAVSAIKEA IRQCAAANGP TQTDLRPPGM PATLAIQGVE EANHKSTAVA REQVSNIKVT  660
QTSRGTKRVD SGNEKESNES CANKKGKVPL EPEVTNLGTQ GVFHQMPGLS NLLPKVSYNI  720
AEGWQKESAS KWGLRGEIVV NLALSAAKHV TIWTVLPFSA IVLQMRQPTN LTLHLH

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019193964.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 4 isoform X1
Refseq	XP_019193965.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 4 isoform X1
Refseq	XP_019193966.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 4 isoform X1
Swissprot	Q6NQJ7	0.0	FRS4_ARATH; Protein FAR1-RELATED SEQUENCE 4
TrEMBL	A0A1S4BQN8	0.0	A0A1S4BQN8_TOBAC; protein FAR1-RELATED SEQUENCE 4-like isoform X3
STRING	XP_009600660.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA496	21	103

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76320.1	0.0	FAR1-related sequence 4

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]