PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000069.1_g00023.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

C2H2

Protein Properties

Length: 517aa MW: 55940.5 Da PI: 8.2971

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000069.1_g00023.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.2	1.5e-05	84	106	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Itr_sc000069.1_g00023.1 84 FVCEICNKGFQRDQNLQLHRRGH 106 89*******************88 PP
2	zf-C2H2	12.7	0.00038	160	182	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H +t+ Itr_sc000069.1_g00023.1 160 WKCDKCSKRYAVQSDWKAHSKTC 182 58*****************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	1.7E-5	83	106	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	7.78E-7	83	106	No hit	No description
PROSITE profile	PS50157	10.949	84	106	IPR007087	Zinc finger, C2H2
Pfam	PF12171	8.3E-5	84	106	IPR022755	Zinc finger, double-stranded RNA binding
SMART	SM00355	0.017	84	106	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	86	106	IPR007087	Zinc finger, C2H2
SMART	SM00355	220	125	155	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	2.5E-4	148	181	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	7.78E-7	155	180	No hit	No description
SMART	SM00355	140	160	180	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 517 aa Download sequence Send to blast
MMMKGLVIQH PHSALDQENM SNLTSASGEA SVSDTNGGIY PQQQQQQVFG SQPVKKKRNQ 60 PGNPDPDAEV IALSPKTLMA TNRFVCEICN KGFQRDQNLQ LHRRGHNLPW KLKQRSNKEV 120 RKKVYVCPEP SCVHHEPSRA LGDLTGIKKH FCRKHGEKKW KCDKCSKRYA VQSDWKAHSK 180 TCGTREYRCD CGTLFSRRDS FITHRAFCDA LAEESARRVM TGSQIHPSQP GCSSASNINL 240 QFPAFQAFPP PQIGGHGDNS PSPAFPSVKK EQQHYNGGGG GGFNLRPEIP PWLITCQPLV 300 GATHGPPPPL FHPGGLDFHH EFTQMAQNPN PNLGGGPTLP PFHQTASSPQ ISATALLQKA 360 AQMGATGIGS GTASSVAPPM LMIGAHSAHV SADQANNLSS RDTARDDVIS DNNGLPIKSS 420 AAAPPPHGGA FLHDITAAAT SFSSSTTDPH GFDASSFEDP FGGIGGANDD MTKDFLGLRP 480 LSHSDIFNIT SLVDNPASDH HHHHHHHQPQ VQKAWPS

Sequence ? help Back to Top

Protein Sequence Length: 517 aa Download sequence Send to blast

MMMKGLVIQH PHSALDQENM SNLTSASGEA SVSDTNGGIY PQQQQQQVFG SQPVKKKRNQ  60
PGNPDPDAEV IALSPKTLMA TNRFVCEICN KGFQRDQNLQ LHRRGHNLPW KLKQRSNKEV  120
RKKVYVCPEP SCVHHEPSRA LGDLTGIKKH FCRKHGEKKW KCDKCSKRYA VQSDWKAHSK  180
TCGTREYRCD CGTLFSRRDS FITHRAFCDA LAEESARRVM TGSQIHPSQP GCSSASNINL  240
QFPAFQAFPP PQIGGHGDNS PSPAFPSVKK EQQHYNGGGG GGFNLRPEIP PWLITCQPLV  300
GATHGPPPPL FHPGGLDFHH EFTQMAQNPN PNLGGGPTLP PFHQTASSPQ ISATALLQKA  360
AQMGATGIGS GTASSVAPPM LMIGAHSAHV SADQANNLSS RDTARDDVIS DNNGLPIKSS  420
AAAPPPHGGA FLHDITAAAT SFSSSTTDPH GFDASSFEDP FGGIGGANDD MTKDFLGLRP  480
LSHSDIFNIT SLVDNPASDH HHHHHHHQPQ VQKAWPS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	1e-35	156	217	3	64	Zinc finger protein JACKDAW
5b3h_F	1e-35	156	217	3	64	Zinc finger protein JACKDAW
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	110	122	KLKQRSNKEVRKK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000305}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00206	DAP	Transfer from AT1G55110	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019194402.1	0.0	PREDICTED: protein indeterminate-domain 7-like
Refseq	XP_019194403.1	0.0	PREDICTED: protein indeterminate-domain 7-like
Refseq	XP_019194404.1	0.0	PREDICTED: protein indeterminate-domain 7-like
Refseq	XP_019194405.1	0.0	PREDICTED: protein indeterminate-domain 7-like
Refseq	XP_019194406.1	0.0	PREDICTED: protein indeterminate-domain 7-like
Swissprot	Q8H1F5	1e-123	IDD7_ARATH; Protein indeterminate-domain 7
TrEMBL	A0A1S4ARV0	0.0	A0A1S4ARV0_TOBAC; protein indeterminate-domain 7-like
STRING	XP_009626387.1	1e-177	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA103	24	350

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G55110.1	1e-118	indeterminate(ID)-domain 7

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]