PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000069.1_g00018.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB
Protein Properties Length: 365aa    MW: 39736.8 Da    PI: 6.7391
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000069.1_g00018.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.51.3e-171461148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                             rg W++eEde+l++++  +G g+W++++r  g+ R++k+c++rw +yl
  Itr_sc000069.1_g00018.1 14 RGLWSPEEDEKLINYISTYGHGCWSSVPRLAGLQRCGKSCRLRWINYL 61
                             788*******************************************97 PP
2Myb_DNA-binding45.71.5e-1467109145
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                              rg+++++E  l+++++  lG++ W+ Ia++++ gRt++++k++w+
  Itr_sc000069.1_g00018.1  67 RGSFSPQEAALIIELHLILGNR-WAQIAKYLP-GRTDNEVKNFWN 109
                              899*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.8E-26664IPR009057Homeodomain-like
PROSITE profilePS5129424.636965IPR017930Myb domain
SuperFamilySSF466892.66E-2911108IPR009057Homeodomain-like
SMARTSM007178.8E-141363IPR001005SANT/Myb domain
PfamPF002491.0E-151461IPR001005SANT/Myb domain
CDDcd001673.39E-121761No hitNo description
Gene3DG3DSA:1.10.10.605.4E-2465117IPR009057Homeodomain-like
PROSITE profilePS5129419.47766116IPR017930Myb domain
SMARTSM007172.4E-1466114IPR001005SANT/Myb domain
PfamPF002492.4E-1367110IPR001005SANT/Myb domain
CDDcd001673.08E-1069109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MGHHSCCNKQ KVKRGLWSPE EDEKLINYIS TYGHGCWSSV PRLAGLQRCG KSCRLRWINY  60
LRPDLKRGSF SPQEAALIIE LHLILGNRWA QIAKYLPGRT DNEVKNFWNS SIKKKIISRA  120
CFSDHLSAAI SSNIPADPNT APFDHQTLYS LNPNYNNLIL HTTHHHQVLQ DQAAALISTA  180
GTTSSSSPSS YLQAAAHQMI DQNGNLVLPM MPSDPAWFLG QQPQNLEHNF SIFSAAANDH  240
IAPDFDMMVF PAMPKLCEMI KAGGEGENMP ISSSSSSSSS SAVVAAAVCG GSDLVVPGSS  300
LSCYPSGYNA RDLHVPAGYD EMEQTDTIIL PSFPLLPPPP PPLSSLSPPS SFSGQSDNQI  360
ITYQS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-32141167108B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019194567.11e-179PREDICTED: myb-related protein 330-like
TrEMBLA0A2C9UZ875e-87A0A2C9UZ87_MANES; Uncharacterized protein
STRINGcassava4.1_009996m8e-88(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13890.22e-69myb domain protein 26