PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc000067.1_g00019.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | LBD | ||||||||
Protein Properties | Length: 168aa MW: 18361.8 Da PI: 8.2045 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 143.5 | 6.5e-45 | 19 | 118 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 +CaaCk+lrr+C +dCv+apyfp +qp+kfanvhk+FGasnv+k+l++lpee+r da+ss+vyeA+ar+rdP+yG++g i++lqqq Itr_sc000067.1_g00019.1 19 PCAACKLLRRRCGPDCVFAPYFPGDQPHKFANVHKVFGASNVSKMLQELPEEQRGDAVSSMVYEANARVRDPIYGCAGAISSLQQQ 104 7************************************************************************************* PP DUF260 87 leqlkaelallkee 100 l+ l+++la++++e Itr_sc000067.1_g00019.1 105 LDVLRTQLAMAQAE 118 *********99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.54 | 18 | 119 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.5E-44 | 19 | 116 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 168 aa Download sequence Send to blast |
MKESSWKRLS SSPPSSSSPC AACKLLRRRC GPDCVFAPYF PGDQPHKFAN VHKVFGASNV 60 SKMLQELPEE QRGDAVSSMV YEANARVRDP IYGCAGAISS LQQQLDVLRT QLAMAQAEVV 120 HLRVRQAAAM SSSPQNSGSP QSIVMGSQPR GYFELDTDVV DQPGYFYS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-47 | 14 | 120 | 6 | 112 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-47 | 14 | 120 | 6 | 112 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019169114.1 | 1e-110 | PREDICTED: LOB domain-containing protein 4-like | ||||
Swissprot | Q9SHE9 | 8e-61 | LBD4_ARATH; LOB domain-containing protein 4 | ||||
TrEMBL | A0A1J6IHI2 | 1e-84 | A0A1J6IHI2_NICAT; Lob domain-containing protein 4 | ||||
TrEMBL | A0A1S4CJ26 | 2e-84 | A0A1S4CJ26_TOBAC; LOB domain-containing protein 4-like | ||||
TrEMBL | A0A1U7XAI8 | 2e-84 | A0A1U7XAI8_NICSY; LOB domain-containing protein 4-like | ||||
STRING | XP_009783465.1 | 3e-85 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA43 | 24 | 669 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G31320.1 | 4e-60 | LOB domain-containing protein 4 |