PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000066.1_g00032.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family NAC
Protein Properties Length: 390aa    MW: 43041 Da    PI: 4.7042
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000066.1_g00032.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM104.31.5e-32612022128
                      NAM   2 ppGfrFhPtdeelvveyLkkkvegkk....leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra.. 77 
                              p+G++F+P+d el+ e+L++k+ + +    + ++e+i++++    i++++P++Lp  vk++ ++++fF +++k+yatg+rk+r+  
  Itr_sc000066.1_g00032.1  61 PAGVKFEPSDVELL-EHLAAKCGEGNsephMFVDEFIPTLEgdegICYTHPENLP-GVKKDGSSVHFFYRTKKAYATGTRKRRKis 144
                              89************.999999988886766333344555423344**********.67788899*******************867 PP

                      NAM  78 ......tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                                    +++ +W++tgk+k+v++ +g ++g+kk++v+y  +++ +k+ kt+Wvmh+y+l
  Itr_sc000066.1_g00032.1 145 nekglvMEHVRWHKTGKTKAVME-NGVQKGCKKVMVLYrtTKKGEKPGKTNWVMHQYHL 202
                              77777777999************.999***********5434667777*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.22E-3645221IPR003441NAC domain
PROSITE profilePS5100529.51760221IPR003441NAC domain
PfamPF023657.6E-1461202IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MTALYMGSSW LISSRGLAQK VRNASSPAEN RIKDCGATRE CPNCHHLIDN SDVSPEWPGF  60
PAGVKFEPSD VELLEHLAAK CGEGNSEPHM FVDEFIPTLE GDEGICYTHP ENLPGVKKDG  120
SSVHFFYRTK KAYATGTRKR RKISNEKGLV MEHVRWHKTG KTKAVMENGV QKGCKKVMVL  180
YRTTKKGEKP GKTNWVMHQY HLGIDEDEKE GGYVVSKIYY QQQKQTDNAV LLSGESDMYA  240
NQAIPMTPMI AIPNPPRAGE TPSCDDYNAA LSPAEEVEGG NKEQYVSLFS SDVEVKCEEY  300
AGGCLAGESQ AVDATDIDDF LLCDEIVGSF DFDNLASDHA TSANINPMAQ EANNTTSTNI  360
ADLVNLEPEF SLQDLPFGSQ DSLSSWLDRF
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019185788.10.0PREDICTED: NAC domain-containing protein 8-like
TrEMBLA0A2Z5HWB10.0A0A2Z5HWB1_IPOBA; NAC13 protein
STRINGXP_009799111.11e-167(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA81752229
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25580.18e-92NAC family protein