PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000065.1_g00008.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ERF
Protein Properties Length: 392aa    MW: 43538.7 Da    PI: 4.2451
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000065.1_g00008.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.61.3e-17117165254
                      AP2   2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkle 54 
                              + +GVr++k +g+W+AeIrd +     + +r++lg++ +aeeA +a+++ r+++e
  Itr_sc000065.1_g00008.1 117 KLRGVRQRK-WGKWAAEIRDpF-----KgRRVWLGTYNSAEEASRAYERKRLEFE 165
                              679*****9.**********55.....45**********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.2E-18117179IPR001471AP2/ERF domain
PfamPF008478.3E-12117166IPR001471AP2/ERF domain
PROSITE profilePS5103218.953117175IPR001471AP2/ERF domain
CDDcd000184.52E-23117164No hitNo description
SuperFamilySSF541712.81E-16118164IPR016177DNA-binding domain
PRINTSPR003671.4E-8118129IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-20119164IPR001471AP2/ERF domain
PRINTSPR003671.4E-8140156IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MPESQRQPLS NQKSFGKKLK PRAEPLKPMR RVRIVCDDPD ATDSSDDEGV VHVKRPKLFV  60
REIHLPFADP FSCPAKAPET ESSCQDSNNG EKEKNLPTRK KVLAKTPGQP QTDSSVKLRG  120
VRQRKWGKWA AEIRDPFKGR RVWLGTYNSA EEASRAYERK RLEFEAMCKN NMDNDSNENS  180
HSHSLVISKP QDLDMTAAYS ALEEDSAESL ASHTSQPSPS SVLEVTSLAS ANKFVVDVIL  240
EANGCEQNAP ELGVMADENP AMPQIDDEME KGPKLGVMDD ETLVVAEIGQ SMEKVPDLGV  300
MDESLSLAEG IEFDMELDAL LAGNDLRQCL DDFVLGDFED FPMYGFEGDE QLPATLPDFD  360
FDLDFNFEGC NDTWMDDAPM MTGTTSLNIA CL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00217DAPTransfer from AT1G68550Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019181081.10.0PREDICTED: ethylene-responsive transcription factor ERF119-like isoform X1
TrEMBLA0A2G2V7U74e-91A0A2G2V7U7_CAPBA; Ethylene-responsive transcription factor
STRINGSolyc05g009450.1.11e-91(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29572351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G25890.22e-23ERF family protein