PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000065.1_g00003.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

CO-like

Protein Properties

Length: 941aa MW: 105615 Da PI: 7.6273

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000065.1_g00003.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	26.3	1.5e-08	8	50	4	40
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 r C+ + k+++++C ++ +lC+ C ++ H+ H +v Itr_sc000065.1_g00003.1 8 RACDYCIGKRARWYCAADDAFLCQACDSSVHSAnplarrHGRV 50 78*****************************656777777766 PP
2	CCT	63.3	7.5e-22	413	454	1	42
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvk 42 Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGr+ + Itr_sc000065.1_g00003.1 413 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRYCS 454 9**************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00336	8.4E-12	5	52	IPR000315	B-box-type zinc finger
PROSITE profile	PS50119	10.068	5	52	IPR000315	B-box-type zinc finger
CDD	cd00021	4.69E-8	8	40	No hit	No description
Pfam	PF00643	8.6E-7	8	50	IPR000315	B-box-type zinc finger
Pfam	PF06203	4.1E-16	413	454	IPR010402	CCT domain
PROSITE profile	PS51017	14.733	413	455	IPR010402	CCT domain
Pfam	PF14111	4.8E-17	607	690	IPR025558	Domain of unknown function DUF4283

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005622	Cellular Component	intracellular
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 941 aa Download sequence Send to blast
MEGKAAARAC DYCIGKRARW YCAADDAFLC QACDSSVHSA NPLARRHGRV ELKTLSINAA 60 AAAAANIEPS WHRGFTRKPR TPRHGRYNNN YNNNSKPKTT DAPSPVVDDV VKTPLHLSIV 120 PVPEMCSDEN YSHDDEKEDN LLLYRVPIFD PFMTDICTTL NSSNITDDAA AFNESKCAGG 180 GHRKTSTATT MPPTTEMEME MEMELAEFAA DVESLLGKGL DDEEESFDME GLGFLGGSGN 240 NVLVVQEKAS TMMEFSRRHE KVVVKVEGGE EEDAPACVAE ADDDIFMAAN ANHHYTSSSS 300 SSLCFDTLEL KFDYDNDYSP NNEKEQVSTG LDKEIKKTIL LNLDYEGVIL AWSDQRCPWT 360 TGQRPELNSH HGWPDCIMQR GCGSGTIHAA AYDGVGDMGI TLGQAAIADD VGREARVSRY 420 REKRRTRLFS KKIRYEVRKL NAEKRPRMKG RYCSCVERKL QLHGTEVIHP FNTTAYQFNT 480 TAVSTMTDGL KSPGSPQWRT PIKTPNTTWG WKEMNDSAEK EIVSDDDVID EDKMDLNCPV 540 IPVTREEKER LQCHSLITKV LGRKVNYSYL LQRLQRECGN RILALILLPS TRTTSWPSLN 600 RSVTMSLRSM TGRGLSLITS YLIVQEWEHN FDPQNNKTNK FLLWVRFPKL PIEYFEEDFM 660 MKIGRRIGLP IKVDSTTSLV SKGKFARACI EVDITKPLLS KFTLCEKDAD RGCNVAGTNS 720 SHVHEGNHPL EDTQPVLQQT RPPVQEYKEN YGAWMLVARK ERRGQRRVGN RSPSPPNTGN 780 RQVTPKNVGQ SDLETSSRFA ILDGLDAMTS VPKKETRELI TRMTIRGSPN RPAVVHIGGR 840 GGRGVAPRRA TVEVLPYGGS EFNYDYKEDP PDIARIFVNK ERPGTKPWLK TKVDGFTNLD 900 GLGHIVVRAH ERIWVLRSRL LLVVSPRITQ VASMLLSTHQ K

Sequence ? help Back to Top

Protein Sequence Length: 941 aa Download sequence Send to blast

MEGKAAARAC DYCIGKRARW YCAADDAFLC QACDSSVHSA NPLARRHGRV ELKTLSINAA  60
AAAAANIEPS WHRGFTRKPR TPRHGRYNNN YNNNSKPKTT DAPSPVVDDV VKTPLHLSIV  120
PVPEMCSDEN YSHDDEKEDN LLLYRVPIFD PFMTDICTTL NSSNITDDAA AFNESKCAGG  180
GHRKTSTATT MPPTTEMEME MEMELAEFAA DVESLLGKGL DDEEESFDME GLGFLGGSGN  240
NVLVVQEKAS TMMEFSRRHE KVVVKVEGGE EEDAPACVAE ADDDIFMAAN ANHHYTSSSS  300
SSLCFDTLEL KFDYDNDYSP NNEKEQVSTG LDKEIKKTIL LNLDYEGVIL AWSDQRCPWT  360
TGQRPELNSH HGWPDCIMQR GCGSGTIHAA AYDGVGDMGI TLGQAAIADD VGREARVSRY  420
REKRRTRLFS KKIRYEVRKL NAEKRPRMKG RYCSCVERKL QLHGTEVIHP FNTTAYQFNT  480
TAVSTMTDGL KSPGSPQWRT PIKTPNTTWG WKEMNDSAEK EIVSDDDVID EDKMDLNCPV  540
IPVTREEKER LQCHSLITKV LGRKVNYSYL LQRLQRECGN RILALILLPS TRTTSWPSLN  600
RSVTMSLRSM TGRGLSLITS YLIVQEWEHN FDPQNNKTNK FLLWVRFPKL PIEYFEEDFM  660
MKIGRRIGLP IKVDSTTSLV SKGKFARACI EVDITKPLLS KFTLCEKDAD RGCNVAGTNS  720
SHVHEGNHPL EDTQPVLQQT RPPVQEYKEN YGAWMLVARK ERRGQRRVGN RSPSPPNTGN  780
RQVTPKNVGQ SDLETSSRFA ILDGLDAMTS VPKKETRELI TRMTIRGSPN RPAVVHIGGR  840
GGRGVAPRRA TVEVLPYGGS EFNYDYKEDP PDIARIFVNK ERPGTKPWLK TKVDGFTNLD  900
GLGHIVVRAH ERIWVLRSRL LLVVSPRITQ VASMLLSTHQ K

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	423	439	RRTRLFSKKIRYEVRKL

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1539	24	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68520.1	1e-33	B-box type zinc finger protein with CCT domain