PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc000063.1_g00028.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | MYB | ||||||||
Protein Properties | Length: 358aa MW: 39337.1 Da PI: 6.3689 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 59.4 | 8.1e-19 | 15 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l++++++ G g+W++ +++ g++R++k+c++rw +yl Itr_sc000063.1_g00028.1 15 KGPWTPEEDQKLINYINKNGHGSWRALPKHAGLNRCGKSCRLRWTNYL 62 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 56.3 | 7.5e-18 | 68 | 113 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++++eE++ ++++++ lG++ W++Ia +++ gRt++++k++w+++l Itr_sc000063.1_g00028.1 68 RGKFSQEEEQTILNLHAILGNK-WSAIATHLP-GRTDNEIKNFWNTHL 113 89********************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.9E-25 | 8 | 65 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 18.277 | 10 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.95E-31 | 12 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.0E-16 | 14 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.6E-18 | 15 | 62 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 9.01E-13 | 17 | 62 | No hit | No description |
PROSITE profile | PS51294 | 27.187 | 63 | 117 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.6E-28 | 66 | 118 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.4E-17 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.3E-16 | 68 | 113 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.00E-13 | 70 | 113 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 358 aa Download sequence Send to blast |
MGRSPCCDES TGLKKGPWTP EEDQKLINYI NKNGHGSWRA LPKHAGLNRC GKSCRLRWTN 60 YLRPDIKRGK FSQEEEQTIL NLHAILGNKW SAIATHLPGR TDNEIKNFWN THLKKKLIQM 120 GYDPMTHRPR TDIFSSLPHL IALANLKELV DQHQSSWEEQ AAMARLQSEM AKFQYLQYLL 180 QTPPAPAGPA FSPNNLNNTV TANNNNNNTN NVSDMEAYSH LLSTVMGTSS STQMESSVLP 240 LSSLGQAIQD SAIPFSHLPD LQPPCAIFQQ SSDHNKDNNM AHQAQGISGF TVLSDGENSP 300 TSTWLPSSLS PSPPPPVVVP EPPTVVDGSG ASSYGGAPPS SVVWPDLLLD DDPLFPDL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-31 | 13 | 117 | 5 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250|UniProtKB:Q9M2D9}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00503 | DAP | Transfer from AT5G10280 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by gravity in roots. {ECO:0000269|PubMed:24902892}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019185308.1 | 0.0 | PREDICTED: transcription factor MYB39 | ||||
Swissprot | Q9SBF3 | 1e-103 | MYB92_ARATH; Transcription factor MYB92 | ||||
TrEMBL | A0A2N9IVV4 | 1e-140 | A0A2N9IVV4_FAGSY; Uncharacterized protein | ||||
STRING | XP_009778686.1 | 1e-136 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G10280.1 | 1e-100 | myb domain protein 92 |
Publications ? help Back to Top | |||
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