PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000063.1_g00028.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB
Protein Properties Length: 358aa    MW: 39337.1 Da    PI: 6.3689
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000063.1_g00028.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.48.1e-191562148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                             +g+WT+eEd++l++++++ G g+W++ +++ g++R++k+c++rw +yl
  Itr_sc000063.1_g00028.1 15 KGPWTPEEDQKLINYINKNGHGSWRALPKHAGLNRCGKSCRLRWTNYL 62
                             79********************************************97 PP

2Myb_DNA-binding56.37.5e-1868113148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                              rg++++eE++ ++++++ lG++ W++Ia +++ gRt++++k++w+++l
  Itr_sc000063.1_g00028.1  68 RGKFSQEEEQTILNLHAILGNK-WSAIATHLP-GRTDNEIKNFWNTHL 113
                              89********************.*********.************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.9E-25865IPR009057Homeodomain-like
PROSITE profilePS5129418.2771062IPR017930Myb domain
SuperFamilySSF466891.95E-3112109IPR009057Homeodomain-like
SMARTSM007176.0E-161464IPR001005SANT/Myb domain
PfamPF002496.6E-181562IPR001005SANT/Myb domain
CDDcd001679.01E-131762No hitNo description
PROSITE profilePS5129427.18763117IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.6E-2866118IPR009057Homeodomain-like
SMARTSM007175.4E-1767115IPR001005SANT/Myb domain
PfamPF002491.3E-1668113IPR001005SANT/Myb domain
CDDcd001678.00E-1370113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MGRSPCCDES TGLKKGPWTP EEDQKLINYI NKNGHGSWRA LPKHAGLNRC GKSCRLRWTN  60
YLRPDIKRGK FSQEEEQTIL NLHAILGNKW SAIATHLPGR TDNEIKNFWN THLKKKLIQM  120
GYDPMTHRPR TDIFSSLPHL IALANLKELV DQHQSSWEEQ AAMARLQSEM AKFQYLQYLL  180
QTPPAPAGPA FSPNNLNNTV TANNNNNNTN NVSDMEAYSH LLSTVMGTSS STQMESSVLP  240
LSSLGQAIQD SAIPFSHLPD LQPPCAIFQQ SSDHNKDNNM AHQAQGISGF TVLSDGENSP  300
TSTWLPSSLS PSPPPPVVVP EPPTVVDGSG ASSYGGAPPS SVVWPDLLLD DDPLFPDL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-31131175108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250|UniProtKB:Q9M2D9}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00503DAPTransfer from AT5G10280Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by gravity in roots. {ECO:0000269|PubMed:24902892}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019185308.10.0PREDICTED: transcription factor MYB39
SwissprotQ9SBF31e-103MYB92_ARATH; Transcription factor MYB92
TrEMBLA0A2N9IVV41e-140A0A2N9IVV4_FAGSY; Uncharacterized protein
STRINGXP_009778686.11e-136(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10280.11e-100myb domain protein 92
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]