PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000063.1_g00027.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family C2H2
Protein Properties Length: 371aa    MW: 40050 Da    PI: 6.7313
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000063.1_g00027.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H222.82.3e-07155176223
                              EETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                               C++Cgk F+r  nL+ H+r H
  Itr_sc000063.1_g00027.1 155 FCEICGKGFKRDANLRMHMRAH 176
                              6*******************99 PP
2zf-C2H211.30.0011243266123
                              EEETTTT.EEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCg.ksFsrksnLkrHirtH 23 
                              y+C+ C+ ksFs   +Lk+H + +
  Itr_sc000063.1_g00027.1 243 YSCNRCNkKSFSVLADLKSHAKHC 266
                              99******************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.38E-6151177No hitNo description
PROSITE profilePS5015711.967154181IPR007087Zinc finger, C2H2
SMARTSM003550.0015154176IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280156176IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.606.9E-6156192IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035554205238IPR015880Zinc finger, C2H2-like
SMARTSM0035524243265IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MSFFGDLRHT PAPTKPPGAA AVGGGADPAV PLQNLANVQA RMDSLQKFLS TSVTGNILLG  60
EEQMGMVSSE IAAAIHQIIV NGAALLASTQ AADEVSPAVS THKSNNSNKR LFSETDFVDQ  120
SAVAAEDGGS GGCGGEDWEI IELDAVELLA EHIHFCEICG KGFKRDANLR MHMRAHGNQF  180
KTVEALAKPG KCGGESGPRG RNTRFSCPFI GCSRNKNHNK FRPLKSAICV KNHFRRSHCP  240
KMYSCNRCNK KSFSVLADLK SHAKHCGETK WKCSCGTNFS RKDKLFGHMA LFEGHMPAVD  300
DEKAAAPMAE DDEEEDSTAK KESNSGGSDN GFLDRLLKDD CDSIDNYCFQ EILGWSSPNA  360
ANGLVDTFFG L
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019185151.10.0PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like
TrEMBLA0A1J6K9Z71e-166A0A1J6K9Z7_NICAT; Protein sensitive to proton rhizotoxicity 1
STRINGXP_009626824.11e-168(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA100002126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34370.23e-78C2H2 family protein