PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000062.1_g00015.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family GRAS
Protein Properties Length: 542aa    MW: 59723.7 Da    PI: 6.0005
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000062.1_g00015.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS310.15.1e-951845422374
                     GRAS   2 velLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfse 86 
                              v+ L+++Ae+++++  +la+ +Larl++  +s +g+p+qR+a+yf+e L++ l+       ++  ++++s+++ +++++a+k+fs+
  Itr_sc000062.1_g00015.1 184 VDELIRFAECFETNAVQLAHVILARLNHKlRSATGKPLQRAAFYFKESLQSLLTW------STRMTRPNSSSEIVHTIKAYKIFSN 263
                              678*************************98************************8......5566677777789************ PP

                     GRAS  87 vsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp...egppslRiTgvgspesgskeeleetgerLakfA 169
                              +sPi+ fs +taNqa+leaveg+  vH+iDfdi+ G++W++++++La+++   + +p lRiT++++ e   + e + ++e+L++fA
  Itr_sc000062.1_g00015.1 264 ISPIPMFSSFTANQAVLEAVEGSMLVHVIDFDIGLGGHWASFMKELAEKAesaRAKPALRITALVPDE--YAVESRLIRENLTQFA 347
                              *************************************************9666669**********55..99999*********** PP

                     GRAS 170 eelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe..adhnsesF 253
                              + l++ f++++++ +++e l+++++++ +gE++aV l+ +++r +            +++ ++++sP+vvv+v++e  +  + +sF
  Itr_sc000062.1_g00015.1 348 RDLNMAFDIDFVLIHTFELLSFKAIKFMEGEKIAVILSPSIFRRV---------GAGFVNDLRRISPHVVVHVDNEglVGFGPSSF 424
                              *******************************************98.........347*******************65566999** PP

                     GRAS 254 lerflealeyysalfdsl.eaklpres...eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaak 335
                               + +++ le+ys+l++sl +a+++  s   ++++k+E  +l ++i+++v ++g++        ++Wre++ +aGF+pv ls++a  
  Itr_sc000062.1_g00015.1 425 RQTVIDGLEFYSTLLESLeAANIGGGSgggDWMRKIETYVLYPKIMEMVGAAGRR-------GSSWREAFIAAGFRPVVLSQFADF 503
                              ******************8899999999999**********************98.......89********************** PP

                     GRAS 336 qaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                              qa++ll +v+++g++v +++++++l+W+dr+Lv++SaWr
  Itr_sc000062.1_g00015.1 504 QADCLLGRVQVRGFHVAKRQAEMLLCWHDRALVATSAWR 542
                              **************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098539.72157522IPR005202Transcription factor GRAS
PfamPF035141.8E-92184542IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030154Biological Processcell differentiation
GO:0048831Biological Processregulation of shoot system development
Sequence ? help Back to Top
Protein Sequence    Length: 542 aa     Download sequence    Send to blast
MKVSFTSNEN VSSKTSTLSS CGSNISIQAP PFPAAAAAAA GVVSYEPKSV LELRRSPSPN  60
VTENAHNPAL DAADISAGCD DPLQLADHVL TNFEDWDSLM KDLGLKEDTT KPNSESLQTQ  120
FPEFPLAHSL DSAQFLPSEH FSFSDNVTAA QYPPPPLSTG GNSNFTLSGN DFQNHNWNLG  180
FDYVDELIRF AECFETNAVQ LAHVILARLN HKLRSATGKP LQRAAFYFKE SLQSLLTWST  240
RMTRPNSSSE IVHTIKAYKI FSNISPIPMF SSFTANQAVL EAVEGSMLVH VIDFDIGLGG  300
HWASFMKELA EKAESARAKP ALRITALVPD EYAVESRLIR ENLTQFARDL NMAFDIDFVL  360
IHTFELLSFK AIKFMEGEKI AVILSPSIFR RVGAGFVNDL RRISPHVVVH VDNEGLVGFG  420
PSSFRQTVID GLEFYSTLLE SLEAANIGGG SGGGDWMRKI ETYVLYPKIM EMVGAAGRRG  480
SSWREAFIAA GFRPVVLSQF ADFQADCLLG RVQVRGFHVA KRQAEMLLCW HDRALVATSA  540
WR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A8e-2519154127378Protein SCARECROW
5b3h_A7e-2519154126377Protein SCARECROW
5b3h_D7e-2519154126377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019173093.10.0PREDICTED: scarecrow-like protein 15
SwissprotO232101e-141SCL15_ARATH; Scarecrow-like protein 15
TrEMBLA0A1S3WZT50.0A0A1S3WZT5_TOBAC; scarecrow-like protein 15
STRINGXP_009803270.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA83052230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36710.11e-142GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]