PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc000061.1_g00003.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | NAC | ||||||||
Protein Properties | Length: 205aa MW: 22890.8 Da PI: 7.9658 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 96.1 | 5.4e-30 | 11 | 87 | 54 | 129 |
NAM 54 eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrle 129 ++kewyfFs rd+kyatg r+nrat+ gyWk tgkd+++l+ +g++ g++ktLvfy+ rap+g+ktdW+mhe+rle Itr_sc000061.1_g00003.1 11 NSKEWYFFSFRDRKYATGYRSNRATSCGYWKGTGKDRRILDPaTGTVLGMRKTLVFYHHRAPHGVKTDWIMHEFRLE 87 678**************************************978889***************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 38.663 | 1 | 105 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.26E-36 | 8 | 105 | IPR003441 | NAC domain |
Pfam | PF02365 | 7.1E-15 | 14 | 86 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 205 aa Download sequence Send to blast |
MTFGRYVAKL NSKEWYFFSF RDRKYATGYR SNRATSCGYW KGTGKDRRIL DPATGTVLGM 60 RKTLVFYHHR APHGVKTDWI MHEFRLENPH IPPKEDWVLC RVFQKSKAAG ICDDSIVGAA 120 AGASTSSPNA VNNALLPAGY SPMSGVPAGN VGMAQSKREE DDEYGFFFNV LNCEEPNFQA 180 ADGGVPLWID EDFRFDNGGN GLLFI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 8e-28 | 8 | 109 | 69 | 172 | NAC domain-containing protein 19 |
3swm_B | 8e-28 | 8 | 109 | 69 | 172 | NAC domain-containing protein 19 |
3swm_C | 8e-28 | 8 | 109 | 69 | 172 | NAC domain-containing protein 19 |
3swm_D | 8e-28 | 8 | 109 | 69 | 172 | NAC domain-containing protein 19 |
3swp_A | 8e-28 | 8 | 109 | 69 | 172 | NAC domain-containing protein 19 |
3swp_B | 8e-28 | 8 | 109 | 69 | 172 | NAC domain-containing protein 19 |
3swp_C | 8e-28 | 8 | 109 | 69 | 172 | NAC domain-containing protein 19 |
3swp_D | 8e-28 | 8 | 109 | 69 | 172 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by auxin. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019178386.1 | 1e-125 | PREDICTED: NAC domain-containing protein 21/22-like | ||||
Swissprot | Q84TE6 | 9e-42 | NAC22_ARATH; NAC domain-containing protein 21/22 | ||||
TrEMBL | A0A1U8GXW6 | 1e-62 | A0A1U8GXW6_CAPAN; protein CUP-SHAPED COTYLEDON 3-like | ||||
TrEMBL | A0A2G2Z6X9 | 8e-63 | A0A2G2Z6X9_CAPAN; Protein CUP-SHAPED COTYLEDON 2 | ||||
STRING | XP_009800923.1 | 1e-62 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1882 | 24 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28530.1 | 8e-56 | NAC domain containing protein 74 |