PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc000059.1_g00005.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | ERF | ||||||||
Protein Properties | Length: 385aa MW: 42126.7 Da PI: 5.5792 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.5 | 1.9e-19 | 112 | 161 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+G+r+++ +g+W+AeIrdp++ r++lg+f+taeeAa+a++ +++++g Itr_sc000059.1_g00005.1 112 QYRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFDTAEEAARAYDIEARRIRG 161 69*******.**********954...4************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 2.75E-22 | 112 | 170 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 24.381 | 112 | 169 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 6.10E-33 | 112 | 171 | No hit | No description |
SMART | SM00380 | 3.3E-37 | 112 | 175 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.7E-32 | 112 | 170 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.1E-11 | 113 | 159 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.6E-12 | 113 | 124 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.6E-12 | 135 | 151 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 385 aa Download sequence Send to blast |
MCGGAIISDF KPPSRSSRRL TADLLWGRAD LSGGKKSNSS GSHYSKPLRS ELVVLDDDFE 60 ADFQDFKDHS YGQVDAKPFA FSASHRPGFS SGPDSDSSKD ADNSSKRKRK NQYRGIRQRP 120 WGKWAAEIRD PRKGVRVWLG TFDTAEEAAR AYDIEARRIR GKKAKVNFPD DAPLTVQKNT 180 AKVNPQKAVP DLSANDFGYY DPSNFFEEKP LTKPNPAPGD MGSKSYFPSD AANLYFSSEE 240 GSNLLDYSDF GWADRSSRSP EISSVLSAAL EADEAQFAEE TNPQKKLKSS SDNLLASNGN 300 TVEKLSEELS AFEAQMKFFD IPYLEGNCSA PTFNAYAAQD GGMNLCLDDW VPCLTRPCGA 360 RVLLGSTVVK SNIVNLGSIA TVAGL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-20 | 112 | 171 | 14 | 74 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the activation of hypoxic gene expression and in ethylene response. Partially redundant with RAP2-2. Acts as a downstream regulator in the ethylene signaling pathway. {ECO:0000269|PubMed:22020282, ECO:0000269|PubMed:22530619}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by hypoxia but not by ethylene. {ECO:0000269|PubMed:22020282}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019196585.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor RAP2-12-like | ||||
Swissprot | Q9SSA8 | 2e-58 | RA212_ARATH; Ethylene-responsive transcription factor RAP2-12 | ||||
TrEMBL | E3VVR1 | 1e-142 | E3VVR1_PETHY; Ethylene-responsive-element-binding factor 2 | ||||
STRING | XP_009775920.1 | 1e-139 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1446 | 24 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G53910.3 | 2e-50 | related to AP2 12 |