PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Itr_sc000056.1_g00012.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 180aa MW: 19260 Da PI: 8.5275 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 10.8 | 0.0015 | 52 | 74 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C++ F++ L H +H Itr_sc000056.1_g00012.1 52 FECKTCNRQFPSFQALGGHRASH 74 89**********99999998887 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.02E-8 | 50 | 119 | No hit | No description |
Pfam | PF13912 | 4.5E-13 | 51 | 76 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.16 | 52 | 74 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.827 | 52 | 79 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 54 | 74 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 2.7E-10 | 96 | 121 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.28 | 97 | 119 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.099 | 97 | 119 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 99 | 119 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 180 aa Download sequence Send to blast |
MVNMNLPMKR GREFDSITAA MANCLMLLSR QHAAAAAGDF SPAPAVAGGR VFECKTCNRQ 60 FPSFQALGGH RASHKRPRLM GDLSLQPPAS PPKPKTHECS ICGVEFALGQ ALGGHMRRHR 120 AVMNNNNESH SSGHGDAPAA AESGGRRALC LDLNLTPLEN DLEFTFGKVA AHHHVVDCSL |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_019192386.1 | 1e-104 | PREDICTED: zinc finger protein ZAT11-like | ||||
TrEMBL | O22086 | 3e-65 | O22086_PETHY; ZPT2-14 | ||||
STRING | XP_009593204.1 | 3e-65 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA366 | 24 | 150 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G28710.1 | 8e-41 | C2H2 family protein |